Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- peroxisome 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035688.1-P | Field mustard | nucleus | 94.49 | 95.3 |
| CDY31716 | Canola | nucleus | 94.49 | 95.3 |
| CDX83299 | Canola | nucleus | 83.05 | 86.73 |
| CDX95764 | Canola | nucleus | 80.93 | 86.04 |
| AT2G28610.1 | Thale cress | nucleus | 86.02 | 83.2 |
| VIT_06s0004g03780.t01 | Wine grape | nucleus | 31.78 | 56.82 |
| PGSC0003DMT400016896 | Potato | mitochondrion | 20.76 | 44.55 |
| GSMUA_Achr5P29220_001 | Banana | nucleus | 34.32 | 40.5 |
| KRG99904 | Soybean | nucleus | 34.75 | 39.05 |
| KRH49082 | Soybean | nucleus | 34.32 | 38.57 |
| Zm00001d010998_P001 | Maize | nucleus | 34.32 | 36.82 |
| Solyc11g072790.1.1 | Tomato | nucleus | 32.2 | 36.36 |
| PGSC0003DMT400065247 | Potato | mitochondrion | 29.66 | 35.0 |
| Solyc11g072770.1.1 | Tomato | mitochondrion, nucleus | 28.81 | 34.52 |
| CDY02582 | Canola | nucleus | 17.37 | 33.88 |
| TraesCS1D01G054000.1 | Wheat | nucleus | 36.02 | 31.84 |
| Zm00001d035535_P001 | Maize | nucleus | 34.75 | 31.78 |
| TraesCS1A01G052000.1 | Wheat | nucleus, plastid | 35.17 | 31.56 |
| TraesCS1B01G069000.1 | Wheat | nucleus, plastid | 35.17 | 31.44 |
| OQU77281 | Sorghum | mitochondrion, nucleus | 36.02 | 31.25 |
| HORVU1Hr1G010580.2 | Barley | nucleus, plastid | 34.32 | 28.83 |
| Os05t0118700-00 | Rice | nucleus | 34.75 | 28.67 |
| CDY70975 | Canola | nucleus | 19.07 | 27.11 |
| CDY71075 | Canola | nucleus | 13.56 | 26.45 |
| CDY01007 | Canola | nucleus | 20.34 | 25.13 |
| CDY08539 | Canola | nucleus | 20.34 | 25.13 |
| CDX70130 | Canola | nucleus | 19.49 | 23.96 |
| CDX98862 | Canola | nucleus | 19.49 | 23.96 |
| CDY14103 | Canola | nucleus | 19.07 | 23.56 |
| CDY04966 | Canola | nucleus | 18.64 | 23.04 |
| CDY40847 | Canola | nucleus | 23.31 | 21.57 |
| CDY17046 | Canola | nucleus | 23.31 | 21.48 |
| CDY43848 | Canola | nucleus | 22.46 | 21.12 |
| CDY25659 | Canola | nucleus | 22.03 | 20.72 |
| CDX81686 | Canola | nucleus | 24.58 | 20.0 |
| CDY32648 | Canola | nucleus | 14.83 | 20.0 |
| CDY41086 | Canola | nucleus | 21.61 | 19.1 |
| CDY33030 | Canola | nucleus | 16.95 | 19.05 |
| CDX80277 | Canola | nucleus | 16.95 | 19.05 |
| CDY33728 | Canola | nucleus | 22.03 | 18.91 |
| CDY02885 | Canola | nucleus | 15.25 | 18.09 |
| CDY01358 | Canola | nucleus | 9.75 | 17.29 |
| CDY55370 | Canola | nucleus | 22.03 | 17.22 |
| CDY29212 | Canola | nucleus | 21.19 | 17.01 |
| CDY38144 | Canola | nucleus | 21.61 | 16.89 |
| CDY47803 | Canola | nucleus | 21.61 | 16.89 |
| CDY30337 | Canola | nucleus | 22.46 | 16.77 |
| CDY66658 | Canola | nucleus | 23.73 | 15.95 |
| CDX92182 | Canola | nucleus | 23.73 | 15.95 |
| CDY31870 | Canola | nucleus | 13.14 | 15.9 |
| CDX93197 | Canola | nucleus | 13.14 | 15.9 |
| CDY51928 | Canola | nucleus | 23.73 | 15.86 |
| CDX75955 | Canola | nucleus | 23.31 | 15.71 |
| CDY29511 | Canola | nucleus | 13.14 | 15.27 |
| CDY41648 | Canola | nucleus | 11.02 | 15.2 |
| CDY65899 | Canola | nucleus | 12.71 | 14.35 |
| CDY72488 | Canola | nucleus, plastid | 13.98 | 13.36 |
| CDX72546 | Canola | nucleus | 13.98 | 12.64 |
| CDX75511 | Canola | nucleus | 13.56 | 12.5 |
| CDX69148 | Canola | nucleus | 13.56 | 12.08 |
| CDY38461 | Canola | nucleus | 13.98 | 12.04 |
| CDY16883 | Canola | nucleus | 13.98 | 11.96 |
| CDY40623 | Canola | nucleus | 13.14 | 11.79 |
| CDX87744 | Canola | nucleus | 15.68 | 11.56 |
| CDY48780 | Canola | nucleus | 15.68 | 11.56 |
| CDY66087 | Canola | nucleus | 13.56 | 11.43 |
| CDY02686 | Canola | nucleus | 13.56 | 11.31 |
| CDY24814 | Canola | nucleus | 11.02 | 10.88 |
| CDY21173 | Canola | nucleus | 13.14 | 10.73 |
| CDY29949 | Canola | nucleus | 13.14 | 10.73 |
| CDY51756 | Canola | plastid | 13.14 | 9.51 |
| CDY50656 | Canola | nucleus | 13.14 | 9.14 |
| CDY69228 | Canola | nucleus | 14.83 | 8.97 |
| CDY17211 | Canola | nucleus | 14.83 | 8.97 |
| CDX79549 | Canola | nucleus | 14.41 | 8.56 |
| CDY29211 | Canola | mitochondrion | 3.81 | 6.04 |
Protein Annotations
| EnsemblPlants:CDX77191 | EnsemblPlantsGene:GSBRNA2T00127836001 | Gene3D:1.10.10.60 | GO:A0A078CJ27 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF115 | PFAM:PF00046 | PFscan:PS50071 | ProteinID:CDX77191 | ProteinID:CDX77191.1 | SEG:seg |
| SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EDE9D8 | MapMan:15.5.3.6 | : | : |
Description
BnaC04g39860D
Coordinates
chrLK031809:+:1931885..1932939
Molecular Weight (calculated)
27262.0 Da
IEP (calculated)
9.498
GRAVY (calculated)
-0.671
Length
236 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPVAATRWC PTPEQLMLLE EMYRSGIRTP NAVQIQQITA HLAFYGRIEG KNVFYWFQNH KARDRQKLRK KLAKQLHQQQ HHLQLQLQQI QPKPISMMSQ
101: PLSNIIDHHN HYHHHYNHHR PYDHMSFACC SQPSPICLSH QGIGVEAQSK VASEHYCNKS GGDEMLMQKP ITGQNTSYGR DWMMMMDMGP RPSYPSSSSV
201: PVPYCNMMMN SPKIPLKTLE LFPISSINSK HDSSKL
101: PLSNIIDHHN HYHHHYNHHR PYDHMSFACC SQPSPICLSH QGIGVEAQSK VASEHYCNKS GGDEMLMQKP ITGQNTSYGR DWMMMMDMGP RPSYPSSSSV
201: PVPYCNMMMN SPKIPLKTLE LFPISSINSK HDSSKL
001: MSPVASTRWC PTPEQLMILE EMYRSGIRTP NAVQIQQITA HLAFYGRIEG KNVFYWFQNH KARDRQKLRK KLAKQLHQQQ HQLQLQLQQI KPKPISSMIS
101: QPVNKNIIDH HNPYHHHHHN HHHNHHRPYD HMSFDCCSHP SPMCLPHQGT GVGEAPSKVM NEYYCTKSGA EEILMQKSIT GPNSSYGRDW MMMMDMGPRP
201: SYPSSSSSPI SCCNMMMSSP KIPLKTLELF PISSINSKQD STKL
101: QPVNKNIIDH HNPYHHHHHN HHHNHHRPYD HMSFDCCSHP SPMCLPHQGT GVGEAPSKVM NEYYCTKSGA EEILMQKSIT GPNSSYGRDW MMMMDMGPRP
201: SYPSSSSSPI SCCNMMMSSP KIPLKTLELF PISSINSKQD STKL
Arabidopsis Description
WOX3Homeobox-leucine zipper transcription factor [Source:UniProtKB/TrEMBL;Acc:Q1PEZ2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.