Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037245.1-P | Field mustard | nucleus | 98.42 | 100.0 |
| CDY55370 | Canola | nucleus | 81.33 | 85.1 |
| CDY38144 | Canola | nucleus | 80.7 | 84.44 |
| CDY47803 | Canola | nucleus | 79.75 | 83.44 |
| CDY29212 | Canola | nucleus | 77.22 | 82.99 |
| AT2G17950.1 | Thale cress | nucleus | 74.05 | 80.14 |
| CDY29211 | Canola | mitochondrion | 34.81 | 73.83 |
| GSMUA_Achr7P07430_001 | Banana | nucleus | 22.78 | 50.35 |
| CDY02582 | Canola | nucleus | 12.34 | 32.23 |
| CDX98862 | Canola | nucleus | 18.04 | 29.69 |
| CDX70130 | Canola | nucleus | 17.72 | 29.17 |
| CDY01007 | Canola | nucleus | 17.41 | 28.8 |
| CDY14103 | Canola | nucleus | 17.09 | 28.27 |
| CDY08539 | Canola | nucleus | 17.09 | 28.27 |
| CDY04966 | Canola | nucleus | 17.09 | 28.27 |
| CDY70975 | Canola | nucleus | 14.24 | 27.11 |
| CDY71075 | Canola | nucleus | 9.81 | 25.62 |
| CDY31716 | Canola | nucleus | 17.41 | 23.5 |
| CDX83299 | Canola | nucleus | 16.77 | 23.45 |
| CDX95764 | Canola | nucleus | 16.46 | 23.42 |
| CDY40847 | Canola | nucleus | 18.35 | 22.75 |
| CDX77191 | Canola | nucleus | 16.77 | 22.46 |
| CDY17046 | Canola | nucleus | 17.72 | 21.88 |
| CDY43848 | Canola | nucleus | 17.09 | 21.51 |
| CDY25659 | Canola | nucleus | 17.09 | 21.51 |
| CDY33728 | Canola | nucleus | 17.09 | 19.64 |
| CDY01358 | Canola | nucleus | 8.23 | 19.55 |
| CDX81686 | Canola | nucleus | 17.41 | 18.97 |
| CDY41086 | Canola | nucleus | 15.82 | 18.73 |
| CDY32648 | Canola | nucleus | 10.13 | 18.29 |
| CDY66658 | Canola | nucleus | 19.3 | 17.38 |
| CDX92182 | Canola | nucleus | 19.3 | 17.38 |
| CDY51928 | Canola | nucleus | 19.3 | 17.28 |
| CDX80277 | Canola | nucleus | 11.39 | 17.14 |
| CDY33030 | Canola | nucleus | 11.39 | 17.14 |
| CDX75955 | Canola | nucleus | 18.99 | 17.14 |
| CDY29511 | Canola | nucleus | 10.76 | 16.75 |
| CDY41648 | Canola | nucleus | 8.86 | 16.37 |
| CDY72488 | Canola | nucleus, plastid | 12.34 | 15.79 |
| CDY02885 | Canola | nucleus | 9.81 | 15.58 |
| CDY31870 | Canola | nucleus | 9.49 | 15.38 |
| CDX93197 | Canola | nucleus | 9.49 | 15.38 |
| CDY65899 | Canola | nucleus | 10.13 | 15.31 |
| CDY29949 | Canola | nucleus | 13.92 | 15.22 |
| CDY21173 | Canola | nucleus | 13.92 | 15.22 |
| CDY16883 | Canola | nucleus | 12.97 | 14.86 |
| CDY48780 | Canola | nucleus | 14.87 | 14.69 |
| CDX87744 | Canola | nucleus | 14.87 | 14.69 |
| CDY38461 | Canola | nucleus | 12.66 | 14.6 |
| CDY02686 | Canola | nucleus | 12.97 | 14.49 |
| CDY66087 | Canola | nucleus | 12.66 | 14.29 |
| CDX75511 | Canola | nucleus | 11.39 | 14.06 |
| CDY51756 | Canola | plastid | 14.24 | 13.8 |
| CDX72546 | Canola | nucleus | 11.39 | 13.79 |
| CDY17211 | Canola | nucleus | 16.46 | 13.33 |
| CDY40623 | Canola | nucleus | 11.08 | 13.31 |
| CDX69148 | Canola | nucleus | 11.08 | 13.21 |
| CDX79549 | Canola | nucleus | 16.46 | 13.1 |
| CDY69228 | Canola | nucleus | 15.82 | 12.82 |
| CDY50656 | Canola | nucleus | 13.61 | 12.68 |
| CDY24814 | Canola | nucleus | 9.18 | 12.13 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.6 | GO:A0A078GYK3 | UniProt:A0A078GYK3 | EnsemblPlants:CDY30337 | ProteinID:CDY30337 |
| ProteinID:CDY30337.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00045018001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom |
| InterPro:IPR001356 | PFAM:PF00046 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF510 | SMART:SM00389 |
| SUPFAM:SSF46689 | UniParc:UPI0004EEF906 | SEG:seg | : | : | : |
Description
BnaA09g09400DBnaA09g09400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYK3]
Coordinates
chrLK032252:+:311424..313459
Molecular Weight (calculated)
35864.0 Da
IEP (calculated)
7.420
GRAVY (calculated)
-1.108
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MEQPQHHHHH HQQTDQESGN NNKSGSGGYP CRQTSTRWTP TTEQIRILKD LYYNNGVRSP TADQIQKISA RLRQYGKIEG KNVFYWFQNH KARERQKKRF
101: NGTTMTTPTT SSPNSVMMAN DHYHHNHHPL LQHHHHGHHH HGVTMHRPAS VNIKLDQENH LLHQNISYPN FQNGNLNHAS SGAEYGALNA SSNGYMSSHL
201: YGSMEQDYSV SYNNVSGGWT NMDHNHHYSA PAYNFFDRPK PLSGLEDHEE EEYGGDAYLE HSRTLSLFPM HGEDNINGGG GAFLKYGQSD GRDYYGRGSC
301: ASLKLCLNSY AGVSPD
101: NGTTMTTPTT SSPNSVMMAN DHYHHNHHPL LQHHHHGHHH HGVTMHRPAS VNIKLDQENH LLHQNISYPN FQNGNLNHAS SGAEYGALNA SSNGYMSSHL
201: YGSMEQDYSV SYNNVSGGWT NMDHNHHYSA PAYNFFDRPK PLSGLEDHEE EEYGGDAYLE HSRTLSLFPM HGEDNINGGG GAFLKYGQSD GRDYYGRGSC
301: ASLKLCLNSY AGVSPD
001: MEPPQHQHHH HQADQESGNN NNNKSGSGGY TCRQTSTRWT PTTEQIKILK ELYYNNAIRS PTADQIQKIT ARLRQFGKIE GKNVFYWFQN HKARERQKKR
101: FNGTNMTTPS SSPNSVMMAA NDHYHPLLHH HHGVPMQRPA NSVNVKLNQD HHLYHHNKPY PSFNNGNLNH ASSGTECGVV NASNGYMSSH VYGSMEQDCS
201: MNYNNVGGGW ANMDHHYSSA PYNFFDRAKP LFGLEGHQEE EECGGDAYLE HRRTLPLFPM HGEDHINGGS GAIWKYGQSE VRPCASLELR LN
101: FNGTNMTTPS SSPNSVMMAA NDHYHPLLHH HHGVPMQRPA NSVNVKLNQD HHLYHHNKPY PSFNNGNLNH ASSGTECGVV NASNGYMSSH VYGSMEQDCS
201: MNYNNVGGGW ANMDHHYSSA PYNFFDRAKP LFGLEGHQEE EECGGDAYLE HRRTLPLFPM HGEDHINGGS GAIWKYGQSE VRPCASLELR LN
Arabidopsis Description
WUSProtein WUSCHEL [Source:UniProtKB/Swiss-Prot;Acc:Q9SB92]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.