Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY55370 | Canola | nucleus | 98.01 | 98.01 |
| CDY38144 | Canola | nucleus | 96.69 | 96.69 |
| Bra039894.1-P | Field mustard | nucleus | 96.36 | 96.36 |
| CDY29212 | Canola | nucleus | 78.48 | 80.61 |
| CDY30337 | Canola | nucleus | 83.44 | 79.75 |
| AT2G17950.1 | Thale cress | nucleus | 73.51 | 76.03 |
| CDY29211 | Canola | mitochondrion | 33.11 | 67.11 |
| GSMUA_Achr7P07430_001 | Banana | nucleus | 22.52 | 47.55 |
| CDY02582 | Canola | nucleus | 12.58 | 31.41 |
| CDX98862 | Canola | nucleus | 18.87 | 29.69 |
| CDX70130 | Canola | nucleus | 18.54 | 29.17 |
| CDY01007 | Canola | nucleus | 18.21 | 28.8 |
| CDY14103 | Canola | nucleus | 17.88 | 28.27 |
| CDY08539 | Canola | nucleus | 17.88 | 28.27 |
| CDY04966 | Canola | nucleus | 17.88 | 28.27 |
| CDY70975 | Canola | nucleus | 14.9 | 27.11 |
| CDY71075 | Canola | nucleus | 10.26 | 25.62 |
| CDY31716 | Canola | nucleus | 17.55 | 22.65 |
| CDX83299 | Canola | nucleus | 16.89 | 22.57 |
| CDX95764 | Canola | nucleus | 16.56 | 22.52 |
| CDX77191 | Canola | nucleus | 16.89 | 21.61 |
| CDY40847 | Canola | nucleus | 18.21 | 21.57 |
| CDY43848 | Canola | nucleus | 17.22 | 20.72 |
| CDY25659 | Canola | nucleus | 17.22 | 20.72 |
| CDY17046 | Canola | nucleus | 17.55 | 20.7 |
| CDY01358 | Canola | nucleus | 8.94 | 20.3 |
| CDY33728 | Canola | nucleus | 17.88 | 19.64 |
| CDX81686 | Canola | nucleus | 18.54 | 19.31 |
| CDY41086 | Canola | nucleus | 16.56 | 18.73 |
| CDX80277 | Canola | nucleus | 11.92 | 17.14 |
| CDY32648 | Canola | nucleus | 9.93 | 17.14 |
| CDY33030 | Canola | nucleus | 11.92 | 17.14 |
| CDY51928 | Canola | nucleus | 19.54 | 16.71 |
| CDY66658 | Canola | nucleus | 19.21 | 16.52 |
| CDX75955 | Canola | nucleus | 18.87 | 16.29 |
| CDX92182 | Canola | nucleus | 18.87 | 16.24 |
| CDY31870 | Canola | nucleus | 10.26 | 15.9 |
| CDX93197 | Canola | nucleus | 10.26 | 15.9 |
| CDY41648 | Canola | nucleus | 8.94 | 15.79 |
| CDY29511 | Canola | nucleus | 10.6 | 15.76 |
| CDY02885 | Canola | nucleus | 10.26 | 15.58 |
| CDY72488 | Canola | nucleus, plastid | 12.58 | 15.38 |
| CDY65899 | Canola | nucleus | 10.6 | 15.31 |
| CDX75511 | Canola | nucleus | 12.91 | 15.23 |
| CDY38461 | Canola | nucleus | 13.24 | 14.6 |
| CDX72546 | Canola | nucleus | 12.58 | 14.56 |
| CDY29949 | Canola | nucleus | 13.91 | 14.53 |
| CDY21173 | Canola | nucleus | 13.91 | 14.53 |
| CDY48780 | Canola | nucleus | 15.23 | 14.38 |
| CDX87744 | Canola | nucleus | 15.23 | 14.38 |
| CDY16883 | Canola | nucleus | 12.91 | 14.13 |
| CDX69148 | Canola | nucleus | 12.25 | 13.96 |
| CDY66087 | Canola | nucleus | 12.91 | 13.93 |
| CDY02686 | Canola | nucleus | 12.91 | 13.78 |
| CDY40623 | Canola | nucleus | 11.92 | 13.69 |
| CDY17211 | Canola | nucleus | 17.22 | 13.33 |
| CDY69228 | Canola | nucleus | 16.89 | 13.08 |
| CDX79549 | Canola | nucleus | 16.56 | 12.59 |
| CDY51756 | Canola | plastid | 13.58 | 12.58 |
| CDY24814 | Canola | nucleus | 9.6 | 12.13 |
| CDY50656 | Canola | nucleus | 13.24 | 11.8 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.6 | GO:A0A078IF28 | UniProt:A0A078IF28 | EnsemblPlants:CDY47803 | ProteinID:CDY47803 |
| ProteinID:CDY47803.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00088229001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom |
| InterPro:IPR001356 | PFAM:PF00046 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF510 | SMART:SM00389 |
| SUPFAM:SSF46689 | UniParc:UPI0004EE27AF | SEG:seg | : | : | : |
Description
BnaC07g06960DBnaC07g06960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IF28]
Coordinates
chrLK032737:-:8207..11115
Molecular Weight (calculated)
34409.9 Da
IEP (calculated)
7.785
GRAVY (calculated)
-0.985
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MEPPQHHHQA DQENGNNNKS GSGSYTCRQT STRWTPTTEQ IRILKDIYYN NGVRSPTADQ IQKISVRLRQ YGKIEGKNVF YWFQNHKARE RQKKRFNGTV
101: MTTPTSSSPN LVMMASDHYY NHHPLLHHPQ HGVTMHRPAS VNVKLDQENH LLHQNRSYPS FNNGTGTECG ALNASSNGYM NSHLYGSIEQ DCSMSYNNVG
201: VEWTNMDHNH IYSAPAYNFF DRPKPMYELE VHEEEGDYGG NAYLEHRRTL PLFPMHGEDH INGGGGVIWK HGQSDGRDRY GRGPCASLKL CLNSYAAGVT
301: QD
101: MTTPTSSSPN LVMMASDHYY NHHPLLHHPQ HGVTMHRPAS VNVKLDQENH LLHQNRSYPS FNNGTGTECG ALNASSNGYM NSHLYGSIEQ DCSMSYNNVG
201: VEWTNMDHNH IYSAPAYNFF DRPKPMYELE VHEEEGDYGG NAYLEHRRTL PLFPMHGEDH INGGGGVIWK HGQSDGRDRY GRGPCASLKL CLNSYAAGVT
301: QD
001: MEPPQHQHHH HQADQESGNN NNNKSGSGGY TCRQTSTRWT PTTEQIKILK ELYYNNAIRS PTADQIQKIT ARLRQFGKIE GKNVFYWFQN HKARERQKKR
101: FNGTNMTTPS SSPNSVMMAA NDHYHPLLHH HHGVPMQRPA NSVNVKLNQD HHLYHHNKPY PSFNNGNLNH ASSGTECGVV NASNGYMSSH VYGSMEQDCS
201: MNYNNVGGGW ANMDHHYSSA PYNFFDRAKP LFGLEGHQEE EECGGDAYLE HRRTLPLFPM HGEDHINGGS GAIWKYGQSE VRPCASLELR LN
101: FNGTNMTTPS SSPNSVMMAA NDHYHPLLHH HHGVPMQRPA NSVNVKLNQD HHLYHHNKPY PSFNNGNLNH ASSGTECGVV NASNGYMSSH VYGSMEQDCS
201: MNYNNVGGGW ANMDHHYSSA PYNFFDRAKP LFGLEGHQEE EECGGDAYLE HRRTLPLFPM HGEDHINGGS GAIWKYGQSE VRPCASLELR LN
Arabidopsis Description
WUSProtein WUSCHEL [Source:UniProtKB/Swiss-Prot;Acc:Q9SB92]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.