Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra017720.1-P | Field mustard | nucleus | 97.72 | 96.98 |
| CDX72546 | Canola | nucleus | 92.02 | 92.72 |
| CDX75511 | Canola | nucleus | 84.79 | 87.11 |
| CDX69148 | Canola | nucleus | 86.69 | 86.04 |
| AT4G35550.1 | Thale cress | nucleus | 83.65 | 82.09 |
| CDY41648 | Canola | nucleus | 52.85 | 81.29 |
| CDY24814 | Canola | nucleus | 72.24 | 79.5 |
| GSMUA_Achr4P29470_001 | Banana | nucleus | 34.98 | 55.76 |
| VIT_04s0044g00150.t01 | Wine grape | nucleus | 49.43 | 54.39 |
| VIT_04s0044g00160.t01 | Wine grape | nucleus | 47.91 | 53.39 |
| PGSC0003DMT400003980 | Potato | nucleus | 54.37 | 52.0 |
| Solyc02g082670.2.1 | Tomato | nucleus | 53.99 | 51.82 |
| CDY01358 | Canola | nucleus | 25.1 | 49.62 |
| GSMUA_Achr1P17980_001 | Banana | nucleus | 44.11 | 48.95 |
| KRH01611 | Soybean | nucleus | 49.05 | 48.5 |
| KRH70496 | Soybean | nucleus | 48.29 | 48.47 |
| GSMUA_Achr7P04050_001 | Banana | nucleus | 40.3 | 45.3 |
| GSMUA_AchrUn_... | Banana | nucleus | 47.53 | 44.01 |
| GSMUA_Achr5P11080_001 | Banana | nucleus | 36.5 | 43.64 |
| CDY29511 | Canola | nucleus | 32.32 | 41.87 |
| CDY65899 | Canola | nucleus | 33.08 | 41.63 |
| CDY31870 | Canola | nucleus | 30.8 | 41.54 |
| CDX93197 | Canola | nucleus | 30.8 | 41.54 |
| GSMUA_Achr3P14840_001 | Banana | nucleus | 44.11 | 40.99 |
| CDY71075 | Canola | nucleus | 9.51 | 20.66 |
| CDY01007 | Canola | nucleus | 13.69 | 18.85 |
| CDY08539 | Canola | nucleus | 13.31 | 18.32 |
| CDY70975 | Canola | nucleus | 11.03 | 17.47 |
| CDY04966 | Canola | nucleus | 12.55 | 17.28 |
| CDY14103 | Canola | nucleus | 12.55 | 17.28 |
| CDX70130 | Canola | nucleus | 12.55 | 17.19 |
| CDX98862 | Canola | nucleus | 12.55 | 17.19 |
| CDY02582 | Canola | nucleus | 7.6 | 16.53 |
| CDY40847 | Canola | nucleus | 15.21 | 15.69 |
| CDY43848 | Canola | nucleus | 14.83 | 15.54 |
| CDY17046 | Canola | nucleus | 14.83 | 15.23 |
| CDY25659 | Canola | nucleus | 14.07 | 14.74 |
| CDY38461 | Canola | nucleus | 14.83 | 14.23 |
| CDX83299 | Canola | nucleus | 12.17 | 14.16 |
| CDY16883 | Canola | nucleus | 14.83 | 14.13 |
| CDY29949 | Canola | nucleus | 15.21 | 13.84 |
| CDY21173 | Canola | nucleus | 15.21 | 13.84 |
| CDY02686 | Canola | nucleus | 14.83 | 13.78 |
| CDX87744 | Canola | nucleus | 16.73 | 13.75 |
| CDY48780 | Canola | nucleus | 16.73 | 13.75 |
| CDY31716 | Canola | nucleus | 12.17 | 13.68 |
| CDY66087 | Canola | nucleus | 14.45 | 13.57 |
| CDX95764 | Canola | nucleus | 11.41 | 13.51 |
| CDY72488 | Canola | nucleus, plastid | 12.55 | 13.36 |
| CDX77191 | Canola | nucleus | 11.79 | 13.14 |
| CDY41086 | Canola | nucleus | 12.93 | 12.73 |
| CDX80277 | Canola | nucleus | 9.89 | 12.38 |
| CDY33728 | Canola | nucleus | 12.93 | 12.36 |
| CDY32648 | Canola | nucleus | 7.98 | 12.0 |
| CDY47803 | Canola | nucleus | 13.69 | 11.92 |
| CDY33030 | Canola | nucleus | 9.51 | 11.9 |
| CDY29212 | Canola | nucleus | 13.31 | 11.9 |
| CDY69228 | Canola | nucleus | 17.49 | 11.79 |
| CDY51756 | Canola | plastid | 14.45 | 11.66 |
| CDY55370 | Canola | nucleus | 13.31 | 11.59 |
| CDY38144 | Canola | nucleus | 13.31 | 11.59 |
| CDY17211 | Canola | nucleus | 17.11 | 11.54 |
| CDY50656 | Canola | nucleus | 14.83 | 11.5 |
| CDX79549 | Canola | nucleus | 16.73 | 11.08 |
| CDY30337 | Canola | nucleus | 13.31 | 11.08 |
| CDY02885 | Canola | nucleus | 7.98 | 10.55 |
| HORVU1Hr1G087940.1 | Barley | cytosol, plasma membrane, plastid | 9.89 | 10.44 |
| CDX81686 | Canola | nucleus | 11.41 | 10.34 |
| CDX75955 | Canola | nucleus | 13.69 | 10.29 |
| CDY66658 | Canola | nucleus | 13.69 | 10.26 |
| CDX92182 | Canola | nucleus | 13.69 | 10.26 |
| CDY51928 | Canola | nucleus | 13.69 | 10.2 |
| CDY29211 | Canola | mitochondrion | 1.9 | 3.36 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.6 | GO:A0A078HV11 | UniProt:A0A078HV11 | EnsemblPlants:CDY40623 | ProteinID:CDY40623 |
| ProteinID:CDY40623.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00071475001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom |
| InterPro:IPR001356 | PFAM:PF00046 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF340 | SMART:SM00389 |
| SUPFAM:SSF46689 | UniParc:UPI0004EF02E7 | SEG:seg | : | : | : |
Description
BnaA03g53400DBnaA03g53400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HV11]
Coordinates
chrLK032476:+:32017..33324
Molecular Weight (calculated)
29172.0 Da
IEP (calculated)
5.175
GRAVY (calculated)
-0.829
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MEWDNQQQPS NNPSSNLQGI DVNGGSGSGG MYVKVMTDEQ LETLRKQIAI YATICERLVE MHKTFTSQQD LAGRVGGLYA DPTFGHKMTG GRQRWTPTPV
101: QLQILERIFD QGIGTPSKQK IKDITEELSQ HGPIAEQNVY NWFQNRRARS KRKQHGGGGG VGSSNNNNGE TEVETDQAET VNEKRKMPES LLVLPDGNNN
201: NGIGTTSATS PRSEEDLCFH CPEMSSDLHL LGVLSNPRDE HLVGKMGMSE SYNLYDHVED YGM
101: QLQILERIFD QGIGTPSKQK IKDITEELSQ HGPIAEQNVY NWFQNRRARS KRKQHGGGGG VGSSNNNNGE TEVETDQAET VNEKRKMPES LLVLPDGNNN
201: NGIGTTSATS PRSEEDLCFH CPEMSSDLHL LGVLSNPRDE HLVGKMGMSE SYNLYDHVED YGM
001: MMEWDNQLQP NNHHSSNLQG IDVNGGSGAG GGMYVKVMTD EQYETLRKQI AIYGTICERL VEMHKTLTAQ QDLAGGRMGG LYADPMMSSL GHKMTARQRW
101: TPTPVQLQIL ERIFDQGTGT PSKQKIKDIT EELSQHGQIA EQNVYNWFQN RRARSKRKQH GGGSSGNNNG ESEVETEVEA LNEKRVVRPE SLLGLPDGNS
201: NNNGLGTTTA TTTAPRPEDL CFQSPEISSD LHLLDVLSNP RDEHLVGKMG LAESYNLYDH VEDYGMSG
101: TPTPVQLQIL ERIFDQGTGT PSKQKIKDIT EELSQHGQIA EQNVYNWFQN RRARSKRKQH GGGSSGNNNG ESEVETEVEA LNEKRVVRPE SLLGLPDGNS
201: NNNGLGTTTA TTTAPRPEDL CFQSPEISSD LHLLDVLSNP RDEHLVGKMG LAESYNLYDH VEDYGMSG
Arabidopsis Description
WOX13WOX13 [Source:UniProtKB/TrEMBL;Acc:A0A178UZQ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.