Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75511 | Canola | nucleus | 82.09 | 85.94 |
| Bra011623.1-P | Field mustard | nucleus | 82.09 | 85.27 |
| CDX69148 | Canola | nucleus | 83.96 | 84.91 |
| CDX72546 | Canola | nucleus | 82.09 | 84.29 |
| CDY40623 | Canola | nucleus | 82.09 | 83.65 |
| CDY41648 | Canola | nucleus | 53.36 | 83.63 |
| Bra017720.1-P | Field mustard | nucleus | 81.34 | 82.26 |
| Bra010531.1-P | Field mustard | nucleus | 71.27 | 80.93 |
| CDY24814 | Canola | nucleus | 71.64 | 80.33 |
| VIT_04s0044g00150.t01 | Wine grape | nucleus | 52.99 | 59.41 |
| VIT_04s0044g00160.t01 | Wine grape | nucleus | 51.87 | 58.9 |
| GSMUA_Achr4P29470_001 | Banana | nucleus | 36.19 | 58.79 |
| PGSC0003DMT400003980 | Potato | nucleus | 54.48 | 53.09 |
| Solyc02g082670.2.1 | Tomato | nucleus | 54.1 | 52.92 |
| GSMUA_Achr1P17980_001 | Banana | nucleus | 45.52 | 51.48 |
| KRH70496 | Soybean | nucleus | 49.25 | 50.38 |
| KRH01611 | Soybean | nucleus | 50.0 | 50.38 |
| GSMUA_Achr7P04050_001 | Banana | nucleus | 42.91 | 49.15 |
| AT1G20710.1 | Thale cress | nucleus | 35.07 | 47.72 |
| GSMUA_Achr5P11080_001 | Banana | nucleus | 37.31 | 45.45 |
| GSMUA_AchrUn_... | Banana | nucleus | 48.13 | 45.42 |
| AT1G20700.1 | Thale cress | nucleus | 33.96 | 43.13 |
| GSMUA_Achr3P14840_001 | Banana | nucleus | 45.15 | 42.76 |
| AT5G05770.1 | Thale cress | nucleus | 10.45 | 22.95 |
| AT3G11260.1 | Thale cress | nucleus | 11.57 | 17.03 |
| AT1G46480.1 | Thale cress | nucleus | 14.18 | 15.14 |
| AT5G17810.2 | Thale cress | nucleus | 14.55 | 14.55 |
| AT2G28610.1 | Thale cress | nucleus | 12.69 | 13.93 |
| AT2G01500.1 | Thale cress | nucleus | 13.81 | 13.65 |
| AT5G59340.1 | Thale cress | nucleus | 13.06 | 13.46 |
| AT5G45980.1 | Thale cress | nucleus | 15.67 | 12.92 |
| AT2G33880.2 | Thale cress | nucleus | 18.28 | 12.63 |
| AT3G03660.3 | Thale cress | nucleus, plastid | 15.3 | 12.58 |
| AT2G17950.1 | Thale cress | nucleus | 13.43 | 12.33 |
| AT3G18010.1 | Thale cress | nucleus | 14.55 | 11.14 |
| HORVU1Hr1G087940.1 | Barley | cytosol, plasma membrane, plastid | 9.7 | 10.44 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.6 | EntrezGene:829707 | UniProt:A0A178UZQ1 | ProteinID:AEE86529.1 | ArrayExpress:AT4G35550 |
| EnsemblPlantsGene:AT4G35550 | RefSeq:AT4G35550 | TAIR:AT4G35550 | RefSeq:AT4G35550-TAIR-G | EnsemblPlants:AT4G35550.1 | TAIR:AT4G35550.1 |
| EMBL:AY048268 | EMBL:AY251404 | EMBL:BT000538 | ProteinID:CAA20025.1 | ProteinID:CAB80271.1 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | Symbol:HB-4 | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_dom | InterPro:IPR001356 | RefSeq:NP_195280.1 | UniProt:O81788 | ProteinID:OAO98594.1 | PFAM:PF00046 |
| PO:PO:0000013 | PO:PO:0000016 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0003011 | PO:PO:0004507 | PO:PO:0005017 |
| PO:PO:0006203 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0009062 | PO:PO:0009073 |
| PO:PO:0020003 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020130 | PO:PO:0020131 |
| PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF340 | SMART:SM00389 |
| SUPFAM:SSF46689 | UniParc:UPI00000AC5E8 | SEG:seg | : | : | : |
Description
WOX13WOX13 [Source:UniProtKB/TrEMBL;Acc:A0A178UZQ1]
Coordinates
chr4:-:16875521..16877451
Molecular Weight (calculated)
29674.7 Da
IEP (calculated)
5.354
GRAVY (calculated)
-0.771
Length
268 amino acids
Sequence
(BLAST)
(BLAST)
001: MMEWDNQLQP NNHHSSNLQG IDVNGGSGAG GGMYVKVMTD EQYETLRKQI AIYGTICERL VEMHKTLTAQ QDLAGGRMGG LYADPMMSSL GHKMTARQRW
101: TPTPVQLQIL ERIFDQGTGT PSKQKIKDIT EELSQHGQIA EQNVYNWFQN RRARSKRKQH GGGSSGNNNG ESEVETEVEA LNEKRVVRPE SLLGLPDGNS
201: NNNGLGTTTA TTTAPRPEDL CFQSPEISSD LHLLDVLSNP RDEHLVGKMG LAESYNLYDH VEDYGMSG
101: TPTPVQLQIL ERIFDQGTGT PSKQKIKDIT EELSQHGQIA EQNVYNWFQN RRARSKRKQH GGGSSGNNNG ESEVETEVEA LNEKRVVRPE SLLGLPDGNS
201: NNNGLGTTTA TTTAPRPEDL CFQSPEISSD LHLLDVLSNP RDEHLVGKMG LAESYNLYDH VEDYGMSG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.