Factsheet for AT1G46480.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17046	Canola	nucleus	86.06	84.38
CDY02582	Canola	nucleus	40.64	84.3
Bra014055.1-P	Field mustard	nucleus	85.26	83.27
CDY40847	Canola	nucleus	84.46	83.14
CDY43848	Canola	nucleus	82.87	82.87
Bra032212.1-P	Field mustard	nucleus	82.87	82.87
CDY25659	Canola	nucleus	82.47	82.47
VIT_18s0001g10160.t01	Wine grape	nucleus	55.78	66.35
KRH15387	Soybean	nucleus	55.38	60.17
KRH61328	Soybean	nucleus	53.39	59.82
KRH52024	Soybean	nucleus	54.18	59.13
KRH05655	Soybean	nucleus	54.58	56.15
PGSC0003DMT400020662	Potato	nucleus	51.79	53.94
Solyc04g078650.2.1	Tomato	nucleus, plastid	51.79	53.72
AT5G05770.1	Thale cress	nucleus	18.33	37.7
AT3G11260.1	Thale cress	nucleus	19.92	27.47
AT2G28610.1	Thale cress	nucleus	22.71	23.36
AT5G59340.1	Thale cress	nucleus	22.71	21.92
AT1G20710.1	Thale cress	nucleus	15.54	19.8
AT2G01500.1	Thale cress	nucleus	21.12	19.56
AT3G18010.1	Thale cress	nucleus	25.5	18.29
AT2G17950.1	Thale cress	nucleus	21.12	18.15
AT1G20700.1	Thale cress	nucleus	15.14	18.01
AT4G35550.1	Thale cress	nucleus	15.14	14.18
AT5G45980.1	Thale cress	nucleus	16.33	12.62
AT5G17810.2	Thale cress	nucleus	12.75	11.94
AT2G33880.2	Thale cress	nucleus	18.33	11.86
AT3G03660.3	Thale cress	nucleus, plastid	13.55	10.43

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	EntrezGene:841113	UniProt:A0A178W175	ProteinID:AAG50620.1	EMBL:AB493501
ProteinID:AEE32127.1	ArrayExpress:AT1G46480	EnsemblPlantsGene:AT1G46480	RefSeq:AT1G46480	TAIR:AT1G46480	RefSeq:AT1G46480-TAIR-G
EnsemblPlants:AT1G46480.1	TAIR:AT1G46480.1	EMBL:AY251396	UniProt:B7U6X4	EMBL:BT010692	EMBL:BT010974
EMBL:FJ440850	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007154	GO:GO:0007165	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009790	GO:GO:0009791	GO:GO:0009987	GO:GO:0010067
GO:GO:0010087	GO:GO:0051301	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	RefSeq:NP_175145.2
ProteinID:OAP11834.1	PFAM:PF00046	PO:PO:0000013	PO:PO:0000014	PO:PO:0000293	PO:PO:0005597
PO:PO:0009005	PO:PO:0009006	PO:PO:0009046	PO:PO:0009053	PO:PO:0020030	PO:PO:0020100
PO:PO:0025275	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF263	UniProt:Q6X7J9	SMART:SM00389
SUPFAM:SSF46689	UniParc:UPI0000197003	Symbol:WOX4	SEG:seg	:	:

Description

WOX4WUSCHEL-related homeobox 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6X7J9]

Coordinates

chr1:-:17236524..17238185

Molecular Weight (calculated)

28676.8 Da

IEP (calculated)

9.833

GRAVY (calculated)

-0.879

Length

251 amino acids

Sequence
(BLAST)

001: MKVHEFSNGF SSSWDQHDST SSLSLSCKRL RPLAPKLSGS PPSPPSSSSG VTSATFDLKN FIRPDQTGPT KFEHKRDPPH QLETHPGGTR WNPTQEQIGI
101: LEMLYKGGMR TPNAQQIEHI TLQLGKYGKI EGKNVFYWFQ NHKARERQKQ KRNNLISLSC QSSFTTTGVF NPSVTMKTRT SSSLDIMREP MVEKEELVEE
201: NEYKRTCRSW GFENLEIENR RNKNSSTMAT TFNKIIDNVT LELFPLHPEG R

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.