Factsheet for PGSC0003DMT400020662

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g078650.2.1	Tomato	nucleus, plastid	97.51	97.11
VIT_18s0001g10160.t01	Wine grape	nucleus	68.46	78.2
KRH61328	Soybean	nucleus	66.39	71.43
KRH52024	Soybean	nucleus	68.05	71.3
KRH15387	Soybean	nucleus	64.73	67.53
KRH05655	Soybean	nucleus	66.39	65.57
CDY02582	Canola	nucleus	26.14	52.07
AT1G46480.1	Thale cress	nucleus	53.94	51.79
CDY43848	Canola	nucleus	51.87	49.8
Bra032212.1-P	Field mustard	nucleus	51.87	49.8
CDY40847	Canola	nucleus	52.28	49.41
CDY25659	Canola	nucleus	51.45	49.4
CDY17046	Canola	nucleus	52.28	49.22
Bra014055.1-P	Field mustard	nucleus	51.87	48.64
PGSC0003DMT400016896	Potato	mitochondrion	17.01	37.27
PGSC0003DMT400053435	Potato	nucleus	21.58	33.12
PGSC0003DMT400077947	Potato	nucleus	25.73	26.27
PGSC0003DMT400065247	Potato	mitochondrion	20.75	25.0
PGSC0003DMT400009157	Potato	nucleus	23.24	19.51
PGSC0003DMT400014464	Potato	nucleus	30.71	18.93
PGSC0003DMT400003980	Potato	nucleus	16.18	14.18
PGSC0003DMT400069529	Potato	nucleus	13.28	13.06
PGSC0003DMT400027850	Potato	nucleus	16.18	11.71

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	UniProt:M1ADW4	PFAM:PF00046	EnsemblPlantsGene:PGSC0003DMG400008009	PGSC:PGSC0003DMG400008009	EnsemblPlants:PGSC0003DMT400020662
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF263	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000294FD2A
SEG:seg	:	:	:	:	:

Description

WOX4 [Source:PGSC_GENE;Acc:PGSC0003DMG400008009]

Coordinates

chr4:-:67907090..67908767

Molecular Weight (calculated)

27704.6 Da

IEP (calculated)

9.103

GRAVY (calculated)

-1.028

Length

241 amino acids

Sequence
(BLAST)

001: MGSSSRSLSM KVHQFTRGFL EHEAASPSLT LGCKRLRPLA PKLNTTNNDT TTTIVTPPFD LKSFIRPESS NSPPKLAYNE DKKDSSQVES HPGGTRWNPT
101: QEQIGILEML YRGGMRTPNA QQIEQITAQL GKYGKIEGKN VFYWFQNHKA RERQKQKRNS LGLSQSPRTP PPIVTSPLSF DTRGEIVRDE DSPYKRKCRG
201: WTFEYMEEEQ QQQQDEEEFI NCRENGDRTL QLFPLHPEGM R

Best Arabidopsis Sequence Match ( AT1G46480.1 )
(BLAST)

001: MKVHEFSNGF SSSWDQHDST SSLSLSCKRL RPLAPKLSGS PPSPPSSSSG VTSATFDLKN FIRPDQTGPT KFEHKRDPPH QLETHPGGTR WNPTQEQIGI
101: LEMLYKGGMR TPNAQQIEHI TLQLGKYGKI EGKNVFYWFQ NHKARERQKQ KRNNLISLSC QSSFTTTGVF NPSVTMKTRT SSSLDIMREP MVEKEELVEE
201: NEYKRTCRSW GFENLEIENR RNKNSSTMAT TFNKIIDNVT LELFPLHPEG R

Arabidopsis Description

WOX4WUSCHEL-related homeobox 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6X7J9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.