Factsheet for PGSC0003DMT400053435

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g096300.2.1	Tomato	nucleus	94.27	93.67
VIT_13s0019g03460.t01	Wine grape	nucleus	51.59	57.45
KRG97769	Soybean	nucleus	63.06	56.9
KRH73152	Soybean	nucleus	62.42	55.37
KRH31116	Soybean	nucleus	63.06	55.0
Bra034855.1-P	Field mustard	mitochondrion	49.68	54.55
Bra028749.1-P	Field mustard	nucleus	59.24	53.45
CDY08539	Canola	nucleus	64.33	52.88
AT3G11260.1	Thale cress	nucleus	61.15	52.75
CDY01007	Canola	nucleus	63.69	52.36
AT5G05770.1	Thale cress	nucleus	39.49	50.82
CDX98862	Canola	nucleus	60.51	49.48
CDX70130	Canola	nucleus	59.87	48.96
Bra009132.1-P	Field mustard	nucleus	59.87	48.96
CDY04966	Canola	nucleus	59.24	48.69
CDY14103	Canola	nucleus	59.24	48.69
GSMUA_Achr7P14860_001	Banana	nucleus	54.78	45.26
Os01t0854500-01	Rice	nucleus	51.59	40.5
OQU87881	Sorghum	nucleus	52.23	37.61
Zm00001d042821_P001	Maize	nucleus	52.23	37.1
TraesCS3B01G399800.1	Wheat	nucleus	49.04	36.84
TraesCS3D01G361100.1	Wheat	nucleus	49.04	36.67
HORVU3Hr1G085050.3	Barley	nucleus	49.04	36.67
TraesCS3A01G368100.1	Wheat	nucleus	49.04	36.32
PGSC0003DMT400016896	Potato	mitochondrion	24.2	34.55
Zm00001d012330_P001	Maize	nucleus	51.59	34.47
PGSC0003DMT400065247	Potato	mitochondrion	31.85	25.0
PGSC0003DMT400020662	Potato	nucleus	33.12	21.58
PGSC0003DMT400077947	Potato	nucleus	29.94	19.92
PGSC0003DMT400009157	Potato	nucleus	34.39	18.82
PGSC0003DMT400014464	Potato	nucleus	36.31	14.58
PGSC0003DMT400069529	Potato	nucleus	19.75	12.65
PGSC0003DMT400027850	Potato	nucleus	24.2	11.41
PGSC0003DMT400003980	Potato	nucleus	19.75	11.27

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102586682	MapMan:15.5.3.6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf
InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M1BUZ8	PFAM:PF00046	EnsemblPlantsGene:PGSC0003DMG400020731	PGSC:PGSC0003DMG400020731
EnsemblPlants:PGSC0003DMT400053435	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF149	SMART:SM00389	SUPFAM:SSF46689
UniParc:UPI0002964847	RefSeq:XP_015158738.1	:	:	:	:

Description

Protein WUSCHEL [Source:PGSC_GENE;Acc:PGSC0003DMG400020731]

Coordinates

chr3:+:34632065..34632817

Molecular Weight (calculated)

18512.8 Da

IEP (calculated)

6.273

GRAVY (calculated)

-0.731

Length

157 amino acids

Sequence
(BLAST)

001: MGTKCGRWNP TAEQVKVLTD LFRSGLRTPT TDQIQKISSQ LSFYGNIESK NVFYWFQNHK ARERQKRRRK VLVDESINDE DMRIQFDNIS SNKQINTNHE
101: TDERVIETLQ LFPLNSLSEY AETEKLRLFT EEYMTFSCSI GAEMDHPTLD LRLSFFS

Best Arabidopsis Sequence Match ( AT3G11260.1 )
(BLAST)

001: MSFSVKGRSL RGNNNGGTGT KCGRWNPTVE QLKILTDLFR AGLRTPTTDQ IQKISTELSF YGKIESKNVF YWFQNHKARE RQKRRKISID FDHHHHQPST
101: RDVFEISEED CQEEEKVIET LQLFPVNSFE DSNSKVDKMR ARGNNQYREY IRETTTTSFS PYSSCGAEME HPPPLDLRLS FL

Arabidopsis Description

WOX5WUSCHEL-related homeobox 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.