Factsheet for VIT_13s0019g03460.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G05770.1	Thale cress	nucleus	52.48	60.66
PGSC0003DMT400053435	Potato	nucleus	57.45	51.59
Solyc03g096300.2.1	Tomato	nucleus	56.74	50.63
KRG97769	Soybean	nucleus	58.87	47.7
KRH73152	Soybean	nucleus	57.45	45.76
KRH31116	Soybean	nucleus	58.16	45.56
AT3G11260.1	Thale cress	nucleus	53.19	41.21
CDX98862	Canola	nucleus	56.03	41.15
CDY14103	Canola	nucleus	55.32	40.84
CDY04966	Canola	nucleus	54.61	40.31
CDX70130	Canola	nucleus	54.61	40.1
Bra009132.1-P	Field mustard	nucleus	54.61	40.1
CDY08539	Canola	nucleus	53.9	39.79
CDY01007	Canola	nucleus	53.19	39.27
Bra028749.1-P	Field mustard	nucleus	48.23	39.08
GSMUA_Achr7P14860_001	Banana	nucleus	52.48	38.95
Bra034855.1-P	Field mustard	mitochondrion	39.01	38.46
Os01t0854500-01	Rice	nucleus	48.94	34.5
VIT_06s0004g03780.t01	Wine grape	nucleus	31.21	33.33
TraesCS3B01G399800.1	Wheat	nucleus	48.23	32.54
TraesCS3D01G361100.1	Wheat	nucleus	48.23	32.38
OQU87881	Sorghum	nucleus	49.65	32.11
TraesCS3A01G368100.1	Wheat	nucleus	48.23	32.08
HORVU3Hr1G085050.3	Barley	nucleus	47.52	31.9
Zm00001d042821_P001	Maize	nucleus	49.65	31.67
Zm00001d012330_P001	Maize	nucleus	50.35	30.21
VIT_18s0001g10160.t01	Wine grape	nucleus	33.33	22.27
VIT_04s0023g03310.t01	Wine grape	nucleus	34.04	17.14
VIT_17s0000g02460.t01	Wine grape	nucleus	41.13	16.86
VIT_01s0011g05020.t01	Wine grape	nucleus	36.88	16.05
VIT_04s0044g00150.t01	Wine grape	nucleus	21.28	12.55
VIT_04s0044g00160.t01	Wine grape	nucleus	20.57	12.29
VIT_08s0056g01200.t01	Wine grape	nucleus	20.57	12.29
VIT_18s0122g01140.t01	Wine grape	nucleus	21.99	11.11
VIT_10s0003g00560.t01	Wine grape	nucleus	24.82	8.5

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	ProteinID:CCB56232	ProteinID:CCB56232.1	UniProt:F6HNL3	EMBL:FN595998
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF00046
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF149	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000210A749
ArrayExpress:VIT_13s0019g03460	EnsemblPlantsGene:VIT_13s0019g03460	EnsemblPlants:VIT_13s0019g03460.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr13:+:4546379..4546804

Molecular Weight (calculated)

15729.6 Da

IEP (calculated)

10.479

GRAVY (calculated)

-0.740

Length

141 amino acids

Sequence
(BLAST)

001: MDEAMSGFVI KAGGGGCGNG GGGTKCGRWN PTTEQVKVLT DLFRSGLRTP STDQIQKISS QLSFYGKIES KNVFYWFQNH KARERQKRRR VSVDESDAVR
101: PDDKISFIKR ALAPSLSGWF SGISTLSEKK DEKQNKILQH S

Best Arabidopsis Sequence Match ( AT3G11260.1 )
(BLAST)

001: MSFSVKGRSL RGNNNGGTGT KCGRWNPTVE QLKILTDLFR AGLRTPTTDQ IQKISTELSF YGKIESKNVF YWFQNHKARE RQKRRKISID FDHHHHQPST
101: RDVFEISEED CQEEEKVIET LQLFPVNSFE DSNSKVDKMR ARGNNQYREY IRETTTTSFS PYSSCGAEME HPPPLDLRLS FL

Arabidopsis Description

WOX5WUSCHEL-related homeobox 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.