Factsheet for VIT_18s0122g01140.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH60910	Soybean	nucleus	52.33	70.19
VIT_04s0044g00150.t01	Wine grape	nucleus	58.78	68.62
KRH51590	Soybean	nucleus	52.69	67.12
VIT_04s0044g00160.t01	Wine grape	nucleus	56.27	66.53
Os01t0818400-01	Rice	nucleus	60.57	63.3
GSMUA_Achr4P29470_001	Banana	nucleus	37.28	63.03
GSMUA_Achr1P17980_001	Banana	nucleus	50.18	59.07
TraesCS3B01G373800.1	Wheat	nucleus	54.84	58.62
Zm00001d043076_P001	Maize	nucleus	57.35	58.61
TraesCSU01G204800.1	Wheat	nucleus	32.62	58.33
TraesCS3A01G341700.1	Wheat	nucleus	54.48	57.36
EES01660	Sorghum	nucleus	56.63	56.83
GSMUA_Achr7P04050_001	Banana	nucleus	46.95	55.98
GSMUA_AchrUn_...	Banana	nucleus	56.63	55.63
TraesCS3D01G335500.1	Wheat	nucleus	52.33	55.51
Zm00001d012516_P001	Maize	nucleus	55.91	55.32
GSMUA_Achr5P11080_001	Banana	nucleus	40.14	50.91
GSMUA_Achr3P14840_001	Banana	nucleus	50.54	49.82
VIT_06s0004g03780.t01	Wine grape	nucleus	11.47	24.24
VIT_13s0019g03460.t01	Wine grape	nucleus	11.11	21.99
VIT_08s0056g01200.t01	Wine grape	nucleus	17.92	21.19
VIT_18s0001g10160.t01	Wine grape	nucleus	13.98	18.48
VIT_04s0023g03310.t01	Wine grape	nucleus	15.77	15.71
VIT_10s0003g00560.t01	Wine grape	nucleus	20.07	13.59
VIT_01s0011g05020.t01	Wine grape	nucleus	15.77	13.58
VIT_17s0000g02460.t01	Wine grape	nucleus	15.77	12.79

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100251229	wikigene:100251229	MapMan:15.5.3.6	EMBL:AM486367	ProteinID:CAN84082
ProteinID:CAN84082.1	ProteinID:CBI40730	ProteinID:CBI40730.3	UniProt:D7UDB5	EMBL:FN596759	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	EntrezGene:LOC100251229	wikigene:LOC100251229
PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF340	SMART:SM00389	SUPFAM:SSF46689
TIGR:TC59625	UniParc:UPI0001985165	ArrayExpress:VIT_18s0122g01140	EnsemblPlantsGene:VIT_18s0122g01140	EnsemblPlants:VIT_18s0122g01140.t01	unigene:Vvi.4480
RefSeq:XP_002272420	RefSeq:XP_002272420.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr18:-:780780..784466

Molecular Weight (calculated)

31305.9 Da

IEP (calculated)

6.101

GRAVY (calculated)

-0.815

Length

279 amino acids

Sequence
(BLAST)

001: MMEWEAQELQ QQPQHHNQNQ NGVVVGGGSG GLYVKVMTDE QMELLRRQIS VYATICEQLV EMHKAITTQQ DLAGMRLGNI YCDPLMASAG HKISSRQRWT
101: PTPVQLQILE RIFDQGNGTP SKQKIKEITT ELTQHGQISE TNVYNWFQNR RARSKRKQSV PLPNNADSEV ETDVESPKEK KTKPDNIQSH ENSALGTENI
201: YFQSPEMGSE MHCLDTQPNK GEPMFPSDRS LRSSGSLGHS SLYETGVPNP RMDQLIGKVE VPGSFSPYRQ GGEGFDMVG

Best Arabidopsis Sequence Match ( AT4G35550.1 )
(BLAST)

001: MMEWDNQLQP NNHHSSNLQG IDVNGGSGAG GGMYVKVMTD EQYETLRKQI AIYGTICERL VEMHKTLTAQ QDLAGGRMGG LYADPMMSSL GHKMTARQRW
101: TPTPVQLQIL ERIFDQGTGT PSKQKIKDIT EELSQHGQIA EQNVYNWFQN RRARSKRKQH GGGSSGNNNG ESEVETEVEA LNEKRVVRPE SLLGLPDGNS
201: NNNGLGTTTA TTTAPRPEDL CFQSPEISSD LHLLDVLSNP RDEHLVGKMG LAESYNLYDH VEDYGMSG

Arabidopsis Description

WOX13WOX13 [Source:UniProtKB/TrEMBL;Acc:A0A178UZQ1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.