Factsheet for VIT_10s0003g00560.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0564500-00	Rice	mitochondrion, nucleus, peroxisome	13.84	87.69
Os07t0533201-00	Rice	mitochondrion, nucleus, peroxisome	13.59	86.15
KRH30862	Soybean	nucleus	57.77	59.5
Solyc02g077390.1.1	Tomato	nucleus	50.49	58.1
KRH32713	Soybean	nucleus	56.31	57.57
HORVU1Hr1G087950.1	Barley	nucleus	17.96	57.36
PGSC0003DMT400027850	Potato	nucleus	44.66	55.26
KRH20358	Soybean	nucleus	50.49	53.47
KRH50138	Soybean	nucleus	50.0	53.09
AT2G33880.2	Thale cress	nucleus	45.63	48.45
GSMUA_Achr9P06660_001	Banana	nucleus	44.9	47.8
CDY69228	Canola	nucleus	44.66	47.18
CDY17211	Canola	nucleus	44.66	47.18
Bra005464.1-P	Field mustard	nucleus	44.66	47.18
Bra022960.1-P	Field mustard	nucleus	44.42	46.56
CDX79549	Canola	nucleus	44.17	45.84
CDY48780	Canola	nucleus	33.98	43.75
CDX87744	Canola	nucleus	33.98	43.75
Bra022008.1-P	Field mustard	nucleus	32.28	43.18
GSMUA_Achr8P27170_001	Banana	nucleus	46.6	42.95
AT5G45980.1	Thale cress	nucleus	33.25	42.15
VIT_08s0056g01200.t01	Wine grape	nucleus	22.82	39.83
KXG22537	Sorghum	plastid	35.68	29.64
Zm00001d039017_P001	Maize	nucleus	33.01	27.59
TraesCS3D01G244300.1	Wheat	nucleus, plastid	34.22	27.49
OQU87296	Sorghum	plastid	35.44	27.39
Os01t0667400-02	Rice	plastid	35.19	27.2
TraesCS3A01G247200.1	Wheat	nucleus, plastid	33.98	27.18
TraesCS3B01G272200.1	Wheat	nucleus, plastid	33.98	27.18
HORVU3Hr1G060950.1	Barley	nucleus, plastid	33.5	26.74
TraesCS1D01G406900.1	Wheat	nucleus	30.34	25.72
TraesCS1A01G399400.1	Wheat	nucleus	30.1	25.51
TraesCS1B01G427400.1	Wheat	nucleus, plastid	29.85	25.36
VIT_06s0004g03780.t01	Wine grape	nucleus	8.01	25.0
VIT_13s0019g03460.t01	Wine grape	nucleus	8.5	24.82
VIT_18s0001g10160.t01	Wine grape	nucleus	11.41	22.27
VIT_04s0044g00160.t01	Wine grape	nucleus	12.14	21.19
VIT_04s0044g00150.t01	Wine grape	nucleus	11.89	20.5
VIT_18s0122g01140.t01	Wine grape	nucleus	13.59	20.07
VIT_01s0011g05020.t01	Wine grape	nucleus	13.59	17.28
VIT_17s0000g02460.t01	Wine grape	nucleus	13.35	15.99
VIT_04s0023g03310.t01	Wine grape	nucleus	10.19	15.0

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100258905	wikigene:100258905	MapMan:15.5.3.6	ProteinID:CCB55644	ProteinID:CCB55644.1
UniProt:F6HM56	EMBL:FN595992	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	EntrezGene:LOC100258905	wikigene:LOC100258905	PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326
PANTHER:PTHR24326:SF212	SMART:SM00389	SUPFAM:SSF46689	TIGR:TC71183	UniParc:UPI000210A162	ArrayExpress:VIT_10s0003g00560
EnsemblPlantsGene:VIT_10s0003g00560	EnsemblPlants:VIT_10s0003g00560.t01	RefSeq:XP_002273188	RefSeq:XP_002273188.1	SEG:seg	:

Description

No Description!

Coordinates

chr10:-:1805314..1807950

Molecular Weight (calculated)

45549.9 Da

IEP (calculated)

8.024

GRAVY (calculated)

-0.418

Length

412 amino acids

Sequence
(BLAST)

001: MASSNRHWPS MFKSKPCNTH HQWQHDINPS LISSGCHRPP YTSVPGCEER SPEPKPRWNP KPEQIRILEA IFNSGMVNPP RDEIRKIRAQ LQEFGQVGDA
101: NVFYWFQNRK SRSKHKQRHL QTSKQQPQQT PPITSNASIT PSSSSSSSEK SSPKESNKSL PLGSAGFMDV SNSPTAPLNQ TYFQNSGEFL QEPLFFPVPQ
201: TGGSTVFSHG LCFSELSNVV QIPDQTVGAY SGLLLTELMN QGVSKKYDEE EKMKLQQQLS YTVATLPPTT SVPPPTTLTL PFTINQIQGV GESGALGPTS
301: AAKSTVFIND VAFEVAVGPF NVREAFGDDA VLINSYGHPV LTNEWGATLQ SLQHGAFYYL VRTLSPSFCE KHETFGCCTC LFFKEPKLLQ PFVAGPFVQA
401: VKTLPTFLTM AM

Best Arabidopsis Sequence Match ( AT2G33880.1 )
(BLAST)

001: MASSNRHWPS MFKSKPHPHQ WQHDINSPLL PSASHRSSPF SSGCEVERSP EPKPRWNPKP EQIRILEAIF NSGMVNPPRE EIRRIRAQLQ EYGQVGDANV
101: FYWFQNRKSR SKHKLRLLHN HSKHSLPQTQ PQPQPQPSAS SSSSSSSSSS KSTKPRKSKN KNNTNLSLGG SQMMGMFPPE PAFLFPVSTV GGFEGITVSS
201: QLGFLSGDMI EQQKPAPTCT GLLLSEIMNG SVSYGTHHQQ HLSEKEVEEM RMKMLQQPQT QICYATTNHQ IASYNNNNNN NNIMLHIPPT TSTATTITTS
301: HSLATVPSTS DQLQVQADAR IRVFINEMEL EVSSGPFNVR DAFGEEVVLI NSAGQPIVTD EYGVALHPLQ HGASYYLI

Arabidopsis Description

WOX9WOX9A [Source:UniProtKB/TrEMBL;Acc:A0A178VQA8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.