CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os07t0533201-00	Rice	mitochondrion, nucleus, peroxisome	11.44	93.85
TraesCS3B01G272200.1	Wheat	nucleus, plastid	52.72	54.56
TraesCS3A01G247200.1	Wheat	nucleus, plastid	52.35	54.17
TraesCS3D01G244300.1	Wheat	nucleus, plastid	51.97	54.0
HORVU3Hr1G060950.1	Barley	nucleus, plastid	52.16	53.88
Os01t0667400-02	Rice	plastid	41.46	41.46
GSMUA_Achr9P06660_001	Banana	nucleus	27.58	37.98
KRH50138	Soybean	nucleus	27.02	37.11
Solyc02g077390.1.1	Tomato	nucleus	24.39	36.31
KXG22537	Sorghum	plastid	33.58	36.09
KRH20358	Soybean	nucleus	26.27	35.99
KRH30862	Soybean	nucleus	26.83	35.75
KRH32713	Soybean	nucleus	26.83	35.48
VIT_10s0003g00560.t01	Wine grape	nucleus	27.39	35.44
AT5G45980.1	Thale cress	nucleus	21.39	35.08
CDX87744	Canola	nucleus	20.64	34.38
CDY48780	Canola	nucleus	20.45	34.06
Bra022008.1-P	Field mustard	nucleus	19.32	33.44
PGSC0003DMT400027850	Potato	nucleus	20.83	33.33
GSMUA_Achr8P27170_001	Banana	nucleus	27.2	32.44
KXG24798	Sorghum	nucleus	13.7	26.45
OQU90491	Sorghum	nucleus	12.2	25.0
KXG39473	Sorghum	nucleus	13.88	23.57
OQU82449	Sorghum	plastid	7.88	17.14
OQU77281	Sorghum	mitochondrion, nucleus	8.63	16.91
OQU82902	Sorghum	nucleus	7.88	16.15
OQU87881	Sorghum	nucleus	6.38	15.6
OQU82514	Sorghum	nucleus	9.38	15.29
OQU87830	Sorghum	nucleus	9.38	14.71
EES01660	Sorghum	nucleus	7.32	14.03

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	UniProt:A0A1W0VYT4	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf
InterPro:Homeobox_dom	InterPro:IPR001356	EnsemblPlants:OQU87296	ProteinID:OQU87296	ProteinID:OQU87296.1	PFAM:PF00046
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF308	SMART:SM00389	EnsemblPlantsGene:SORBI_3003G250100	SUPFAM:SSF46689
UniParc:UPI0009DC823C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:58842868..58847911

Molecular Weight (calculated)

54517.7 Da

IEP (calculated)

8.228

GRAVY (calculated)

-0.042

Length

533 amino acids

Sequence
(BLAST)

001: MASSFNNSHW PSMFRSKHAA EPWQTQPDIS SSPPSLLSAA GGSTTIGRCL RHPLSGYSGG EERTPDPKPR WNPRPEQIRI LEAIFNSGMI NPPRDEIPRI
101: RMRLQEYGQV GDANVFYWFQ NRKARSKNKL RTTTAGAGRL GLGLARAPGR GAAAAAPVTP PPPPPQQQQQ SLIQNQFQLL ASPAQAPASS SSSSSDRSSG
201: SSKPAAKPAA AQAMSSATAA AMDLLGPLAA ACPHQMYYQG RHPVAPVSAP AHKVLDDLDP VLQQLPQGYC LSAAEVAAIL GAGGQYMHVP VQQQPPAAFS
301: AGAFLGLCNE VTEPTVVTGH RTCAGLGQFW LGGGADHHQL IGKNNTTAAT NTVVREVAHE DATKLGLLQY GFGASTAMEA APLAASPAGA AVTVACVAAT
401: TAGLTGLPPA STNGVVANYD LLQGLAGVPG AGAVGVVSTG AGAPAAVAVA APASAAAAQE GVVALCITDT VTGKSVAHNV AAARLDVRAH FGEAAVLLRG
501: VGERGLGLEP VPIDASGCTV EPLQHGAFYY VLV

Best Arabidopsis Sequence Match ( AT2G33880.1 )
(BLAST)

001: MASSNRHWPS MFKSKPHPHQ WQHDINSPLL PSASHRSSPF SSGCEVERSP EPKPRWNPKP EQIRILEAIF NSGMVNPPRE EIRRIRAQLQ EYGQVGDANV
101: FYWFQNRKSR SKHKLRLLHN HSKHSLPQTQ PQPQPQPSAS SSSSSSSSSS KSTKPRKSKN KNNTNLSLGG SQMMGMFPPE PAFLFPVSTV GGFEGITVSS
201: QLGFLSGDMI EQQKPAPTCT GLLLSEIMNG SVSYGTHHQQ HLSEKEVEEM RMKMLQQPQT QICYATTNHQ IASYNNNNNN NNIMLHIPPT TSTATTITTS
301: HSLATVPSTS DQLQVQADAR IRVFINEMEL EVSSGPFNVR DAFGEEVVLI NSAGQPIVTD EYGVALHPLQ HGASYYLI

Arabidopsis Description

WOX9WOX9A [Source:UniProtKB/TrEMBL;Acc:A0A178VQA8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.