Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400027850 | Potato | nucleus | 85.75 | 92.19 |
| Os05t0564500-00 | Rice | mitochondrion, nucleus, peroxisome | 16.2 | 89.23 |
| Os07t0533201-00 | Rice | mitochondrion, nucleus, peroxisome | 15.92 | 87.69 |
| HORVU1Hr1G087950.1 | Barley | nucleus | 20.11 | 55.81 |
| KRH30862 | Soybean | nucleus | 57.54 | 51.5 |
| VIT_10s0003g00560.t01 | Wine grape | nucleus | 58.1 | 50.49 |
| KRH32713 | Soybean | nucleus | 56.7 | 50.37 |
| KRH20358 | Soybean | nucleus | 53.35 | 49.1 |
| KRH50138 | Soybean | nucleus | 53.07 | 48.97 |
| GSMUA_Achr9P06660_001 | Banana | nucleus | 47.49 | 43.93 |
| AT5G45980.1 | Thale cress | nucleus | 38.55 | 42.46 |
| AT2G33880.2 | Thale cress | nucleus | 45.81 | 42.27 |
| CDY48780 | Canola | nucleus | 36.87 | 41.25 |
| CDX87744 | Canola | nucleus | 36.87 | 41.25 |
| Bra022008.1-P | Field mustard | nucleus | 35.47 | 41.23 |
| Bra022960.1-P | Field mustard | nucleus | 44.97 | 40.97 |
| GSMUA_Achr8P27170_001 | Banana | nucleus | 50.84 | 40.72 |
| CDY69228 | Canola | nucleus | 44.13 | 40.51 |
| CDY17211 | Canola | nucleus | 44.13 | 40.51 |
| Bra005464.1-P | Field mustard | nucleus | 44.13 | 40.51 |
| CDX79549 | Canola | nucleus | 44.69 | 40.3 |
| Solyc06g072890.1.1 | Tomato | nucleus | 25.7 | 34.85 |
| KXG22537 | Sorghum | plastid | 37.99 | 27.42 |
| Zm00001d039017_P001 | Maize | nucleus | 35.75 | 25.96 |
| TraesCS1A01G399400.1 | Wheat | nucleus | 34.08 | 25.1 |
| TraesCS1B01G427400.1 | Wheat | nucleus, plastid | 33.8 | 24.95 |
| TraesCS1D01G406900.1 | Wheat | nucleus | 33.8 | 24.9 |
| OQU87296 | Sorghum | plastid | 36.31 | 24.39 |
| Os01t0667400-02 | Rice | plastid | 36.31 | 24.39 |
| TraesCS3B01G272200.1 | Wheat | nucleus, plastid | 34.92 | 24.27 |
| Solyc03g096300.2.1 | Tomato | nucleus | 10.61 | 24.05 |
| TraesCS3D01G244300.1 | Wheat | nucleus, plastid | 34.36 | 23.98 |
| TraesCS3A01G247200.1 | Wheat | nucleus, plastid | 34.36 | 23.88 |
| HORVU3Hr1G060950.1 | Barley | nucleus, plastid | 34.36 | 23.84 |
| Solyc11g072770.1.1 | Tomato | mitochondrion, nucleus | 12.01 | 21.83 |
| Solyc02g082670.2.1 | Tomato | nucleus | 14.25 | 18.61 |
| Solyc11g072790.1.1 | Tomato | nucleus | 10.61 | 18.18 |
| Solyc06g076000.1.1 | Tomato | nucleus | 12.01 | 17.92 |
| Solyc04g078650.2.1 | Tomato | nucleus, plastid | 11.73 | 17.36 |
| Solyc02g083950.2.1 | Tomato | nucleus | 13.13 | 17.28 |
| Solyc03g118770.2.1 | Tomato | nucleus | 13.13 | 11.96 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.6 | ProteinID:ACI23248.1 | UniProt:B6E0Y5 | EMBL:FJ190663 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | PFAM:PF00046 | PFscan:PS50071 |
| PANTHER:PTHR24326 | PANTHER:PTHR24326:SF308 | SMART:SM00389 | SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc02g077390.1 | EnsemblPlants:Solyc02g077390.1.1 |
| UniParc:UPI000181C833 | SEG:seg | : | : | : | : |
Description
COMPOUND INFLORESCENCE [Source:UniProtKB/TrEMBL;Acc:B6E0Y5]
Coordinates
chr2:-:42336107..42338039
Molecular Weight (calculated)
40147.6 Da
IEP (calculated)
7.568
GRAVY (calculated)
-0.689
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MASSNRHWPS MFKSKPCNSH HHQWQHDINS SIIQQRPPCN PEERSPEPKP RWNPRPEQIR ILEAIFNSGM VNPPRDEIRK IRAKLQEYGQ VGDANVFYWF
101: QNRKSRSKHK QRHLQAKAQQ QHHNNNNNSS HQPIITSSSS SSDKSSPNSL TFSIGTSNVM DLLNSPTSSV NQQNYNEFLS NEQPFFFTVQ PPPVVPTHDH
201: SAGFCFQDSS TFTPHSSSSG LLLNEWMGGI STQAPNNSKK DENDKINLQS QLMSYTVTST VSPLATTTIP TISHIQGVTV DPNDAGPTRS TVFINDVAFE
301: VGIGPFNVRE VFGEDAVLIH SSGEPLITNE WGITIQPLQH GAFYYLLRTS SIASTHHI
101: QNRKSRSKHK QRHLQAKAQQ QHHNNNNNSS HQPIITSSSS SSDKSSPNSL TFSIGTSNVM DLLNSPTSSV NQQNYNEFLS NEQPFFFTVQ PPPVVPTHDH
201: SAGFCFQDSS TFTPHSSSSG LLLNEWMGGI STQAPNNSKK DENDKINLQS QLMSYTVTST VSPLATTTIP TISHIQGVTV DPNDAGPTRS TVFINDVAFE
301: VGIGPFNVRE VFGEDAVLIH SSGEPLITNE WGITIQPLQH GAFYYLLRTS SIASTHHI
001: MSSSNKNWPS MFKSKPCNNN HHHQHEIDTP SYMHYSNCNL SSSFSSDRIP DPKPRWNPKP EQIRILESIF NSGTINPPRE EIQRIRIRLQ EYGQIGDANV
101: FYWFQNRKSR AKHKLRVHHK SPKMSKKDKT VIPSTDADHC FGFVNQETGL YPVQNNELVV TEPAGFLFPV HNDPSAAQSA FGFGDFVVPV VTEEGMAFST
201: VNNGVNLETN ENFDKIPAIN LYGGDGNGGG NCFPPLTVPL TINQSQEKRD VGLSGGEDVG DNVYPVRMTV FINEMPIEVV SGLFNVKAAF GNDAVLINSF
301: GQPILTDEFG VTYQPLQNGA IYYLI
101: FYWFQNRKSR AKHKLRVHHK SPKMSKKDKT VIPSTDADHC FGFVNQETGL YPVQNNELVV TEPAGFLFPV HNDPSAAQSA FGFGDFVVPV VTEEGMAFST
201: VNNGVNLETN ENFDKIPAIN LYGGDGNGGG NCFPPLTVPL TINQSQEKRD VGLSGGEDVG DNVYPVRMTV FINEMPIEVV SGLFNVKAAF GNDAVLINSF
301: GQPILTDEFG VTYQPLQNGA IYYLI
Arabidopsis Description
WOX8WUSCHEL-related homeobox 8 [Source:UniProtKB/Swiss-Prot;Acc:Q6X7J5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.