Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400053435 | Potato | nucleus | 93.67 | 94.27 |
| VIT_13s0019g03460.t01 | Wine grape | nucleus | 50.63 | 56.74 |
| KRG97769 | Soybean | nucleus | 62.03 | 56.32 |
| KRH73152 | Soybean | nucleus | 62.03 | 55.37 |
| Bra034855.1-P | Field mustard | mitochondrion | 49.37 | 54.55 |
| Bra028749.1-P | Field mustard | nucleus | 59.49 | 54.02 |
| KRH31116 | Soybean | nucleus | 61.39 | 53.89 |
| AT3G11260.1 | Thale cress | nucleus | 61.39 | 53.3 |
| CDY08539 | Canola | nucleus | 63.92 | 52.88 |
| CDY01007 | Canola | nucleus | 63.29 | 52.36 |
| AT5G05770.1 | Thale cress | nucleus | 39.87 | 51.64 |
| CDX98862 | Canola | nucleus | 61.39 | 50.52 |
| CDX70130 | Canola | nucleus | 60.76 | 50.0 |
| Bra009132.1-P | Field mustard | nucleus | 60.76 | 50.0 |
| CDY14103 | Canola | nucleus | 59.49 | 49.21 |
| CDY04966 | Canola | nucleus | 59.49 | 49.21 |
| GSMUA_Achr7P14860_001 | Banana | nucleus | 54.43 | 45.26 |
| Os01t0854500-01 | Rice | nucleus | 50.0 | 39.5 |
| OQU87881 | Sorghum | nucleus | 51.27 | 37.16 |
| Zm00001d042821_P001 | Maize | nucleus | 51.27 | 36.65 |
| TraesCS3B01G399800.1 | Wheat | nucleus | 48.1 | 36.36 |
| TraesCS3D01G361100.1 | Wheat | nucleus | 48.1 | 36.19 |
| HORVU3Hr1G085050.3 | Barley | nucleus | 48.1 | 36.19 |
| TraesCS3A01G368100.1 | Wheat | nucleus | 48.1 | 35.85 |
| Zm00001d012330_P001 | Maize | nucleus | 50.63 | 34.04 |
| Solyc11g072770.1.1 | Tomato | mitochondrion, nucleus | 31.01 | 24.87 |
| Solyc04g078650.2.1 | Tomato | nucleus, plastid | 32.91 | 21.49 |
| Solyc11g072790.1.1 | Tomato | nucleus | 27.85 | 21.05 |
| Solyc06g076000.1.1 | Tomato | nucleus | 30.38 | 20.0 |
| Solyc02g083950.2.1 | Tomato | nucleus | 34.18 | 19.85 |
| Solyc03g118770.2.1 | Tomato | nucleus | 35.44 | 14.25 |
| Solyc06g072890.1.1 | Tomato | nucleus | 18.99 | 11.36 |
| Solyc02g082670.2.1 | Tomato | nucleus | 19.62 | 11.31 |
| Solyc02g077390.1.1 | Tomato | nucleus | 24.05 | 10.61 |
Protein Annotations
| EnsemblPlants:Solyc03g096300.2.1 | EnsemblPlantsGene:Solyc03g096300.2 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_dom | InterPro:IPR001356 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF149 | PFAM:PF00046 | PFscan:PS50071 |
| SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0002767C07 | UniProt:K4BJ52 | MapMan:15.5.3.6 | : |
Description
No Description!
Coordinates
chr3:-:58319094..58319670
Molecular Weight (calculated)
18667.0 Da
IEP (calculated)
6.790
GRAVY (calculated)
-0.809
Length
158 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTKCGRWNP TVEQVKVLTD LFRSGLRTPT TDQIQKISSQ LSFYGNIESK NVFYWFQNHK ARERQKRRRK VLVDETNNDE DMRIQLDNIS SNKQINSNHD
101: TDERVIETLQ LFPLNSYAET EKLRLFTEEY MKENMTFSCS IGAEMDHPTL DLRLSFFS
101: TDERVIETLQ LFPLNSYAET EKLRLFTEEY MKENMTFSCS IGAEMDHPTL DLRLSFFS
001: MSFSVKGRSL RGNNNGGTGT KCGRWNPTVE QLKILTDLFR AGLRTPTTDQ IQKISTELSF YGKIESKNVF YWFQNHKARE RQKRRKISID FDHHHHQPST
101: RDVFEISEED CQEEEKVIET LQLFPVNSFE DSNSKVDKMR ARGNNQYREY IRETTTTSFS PYSSCGAEME HPPPLDLRLS FL
101: RDVFEISEED CQEEEKVIET LQLFPVNSFE DSNSKVDKMR ARGNNQYREY IRETTTTSFS PYSSCGAEME HPPPLDLRLS FL
Arabidopsis Description
WOX5WUSCHEL-related homeobox 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.