Factsheet for Solyc06g076000.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400077947	Potato	nucleus	91.25	92.8
KRH23053	Soybean	nucleus	41.25	46.7
KRH10279	Soybean	nucleus	40.83	44.75
KRH29810	Soybean	nucleus	47.92	44.06
AT5G59340.1	Thale cress	nucleus	42.08	38.85
GSMUA_Achr10P...	Banana	nucleus	36.67	37.77
KRH24809	Soybean	nucleus	47.08	34.56
CDX80277	Canola	nucleus	30.0	34.29
Bra002576.1-P	Field mustard	nucleus	29.58	33.81
CDY33030	Canola	nucleus	29.58	33.81
Solyc03g096300.2.1	Tomato	nucleus	20.0	30.38
CDY32648	Canola	nucleus	21.67	29.71
Solyc11g072790.1.1	Tomato	nucleus	25.42	29.19
CDY02885	Canola	nucleus	23.75	28.64
Bra020321.1-P	Field mustard	nucleus	23.33	28.14
Solyc11g072770.1.1	Tomato	mitochondrion, nucleus	21.25	25.89
Solyc04g078650.2.1	Tomato	nucleus, plastid	25.83	25.62
Solyc02g083950.2.1	Tomato	nucleus	22.92	20.22
Solyc03g118770.2.1	Tomato	nucleus	26.67	16.29
Solyc06g072890.1.1	Tomato	nucleus	15.42	14.02
Solyc02g082670.2.1	Tomato	nucleus	13.75	12.04
Solyc02g077390.1.1	Tomato	nucleus	17.92	12.01

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom
InterPro:IPR001356	UniProt:K4C9W1	PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF203
SMART:SM00389	SUPFAM:SSF46689	EnsemblPlantsGene:Solyc06g076000.1	EnsemblPlants:Solyc06g076000.1.1	UniParc:UPI0002766F21	SEG:seg

Description

WUSCHEL-related homeobox 2 [Source:Projected from Arabidopsis thaliana (AT5G59340) UniProtKB/Swiss-Prot;Acc:Q6X7K1]

Coordinates

chr6:+:47185689..47187101

Molecular Weight (calculated)

26841.5 Da

IEP (calculated)

8.389

GRAVY (calculated)

-0.575

Length

240 amino acids

Sequence
(BLAST)

001: MSDSSVDMIT SGGSPVGCRW NPTKEQIDLL ESLYKQGIRT PSADQIQQIT GRLRAFGHIE GKNVFYWFQN HKARQRQKQK QDKFAYYNRF LHRTSVFPPP
101: NCPNGFVVVC SPYYTAQNNL GFYQQYPAVP SMIIPGPGGF KRRATCNQET LNLCEQNNSP NANKEFITQE TLNLFPLHPT GVLQEKTTIA DSSSSSSTCV
201: PRDHLSSNTT SNSVEVNCFT DLGIGASDRP QPVFNFLCGN

Best Arabidopsis Sequence Match ( AT5G59340.1 )
(BLAST)

001: MENEVNAGTA SSSRWNPTKD QITLLENLYK EGIRTPSADQ IQQITGRLRA YGHIEGKNVF YWFQNHKARQ RQKQKQERMA YFNRLLHKTS RFFYPPPCSN
101: VGCVSPYYLQ QASDHHMNQH GSVYTNDLLH RNNVMIPSGG YEKRTVTQHQ KQLSDIRTTA ATRMPISPSS LRFDRFALRD NCYAGEDINV NSSGRKTLPL
201: FPLQPLNASN ADGMGSSSFA LGSDSPVDCS SDGAGREQPF IDFFSGGSTS TRFDSNGNGL

Arabidopsis Description

WOX2WUSCHEL-related homeobox 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6X7K1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.