Factsheet for Solyc03g118770.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400014464	Potato	nucleus	93.38	93.86
KRH60534	Soybean	nucleus	48.85	53.48
KRH48612	Soybean	nucleus	47.33	52.1
CDY71075	Canola	nucleus	15.78	51.24
KRH39103	Soybean	nucleus	40.71	49.84
KRH41831	Soybean	nucleus	29.01	47.9
AT3G18010.1	Thale cress	nucleus	35.88	40.29
CDX75955	Canola	nucleus	35.88	40.29
Bra001694.1-P	Field mustard	nucleus	35.88	39.94
CDY51928	Canola	nucleus	35.88	39.94
CDY66658	Canola	nucleus	35.11	39.32
CDX92182	Canola	nucleus	35.11	39.32
Bra022267.1-P	Field mustard	nucleus	35.11	39.32
Solyc03g096300.2.1	Tomato	nucleus	14.25	35.44
Solyc04g078650.2.1	Tomato	nucleus, plastid	19.08	30.99
Solyc11g072770.1.1	Tomato	mitochondrion, nucleus	14.25	28.43
Solyc02g083950.2.1	Tomato	nucleus	19.59	28.31
Solyc11g072790.1.1	Tomato	nucleus	14.5	27.27
Solyc06g076000.1.1	Tomato	nucleus	16.29	26.67
Solyc06g072890.1.1	Tomato	nucleus	10.69	15.91
Solyc02g082670.2.1	Tomato	nucleus	10.94	15.69
Solyc02g077390.1.1	Tomato	nucleus	11.96	13.13

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0007275	GO:GO:0008150	GO:GO:0099402	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356
UniProt:K4BM26	PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF224	SMART:SM00389
SUPFAM:SSF46689	EnsemblPlantsGene:Solyc03g118770.2	EnsemblPlants:Solyc03g118770.2.1	UniParc:UPI00027661A2	SEG:seg	:

Description

No Description!

Coordinates

chr3:-:67596076..67598438

Molecular Weight (calculated)

44060.0 Da

IEP (calculated)

7.132

GRAVY (calculated)

-0.894

Length

393 amino acids

Sequence
(BLAST)

001: MWMMGYNEGG DFNMSDSCNG RKLRPLMPRV PHAPTANPTN CLRNFHGENF IALNHHQLAM SEQNKRDFNT QLVVSSRWNP TPEQLQTLEE LYRRGTRTPS
101: AEQIQHITAQ LRRYGKIEGK NVFYWFQNHK ARERQKRRRQ LESSANGNGN GGGGDDQSQS NCNAENAERK ESGANRTVFE IEQTKHWPSP TNCSTLAEKT
201: AAKTKAGAAS AAAGATAAGV AESCRVAAAE RWIPFDEGEQ RRSLLAERNA TWQMMHLSCS PPTINNNTNC ATICSNTITT ATCTPIIRSC PSTPTTIDHQ
301: TKQLFKPKDH LNIFITPFRC DQKHQNIIGD EEEEGEGNGH EAQTLELFPL RSSNDNNDEN NFSDKDEIGA AANLNNNFNG SHYQFFEFLP LKN

Best Arabidopsis Sequence Match ( AT3G18010.1 )
(BLAST)

001: MWTMGYNEGG ADSFNGGRKL RPLIPRLTSC PTAAVNTNSD HRFNMAVVTM TAEQNKRELM MLNSEPQHPP VMVSSRWNPT PDQLRVLEEL YRQGTRTPSA
101: DHIQQITAQL RRYGKIEGKN VFYWFQNHKA RERQKRRRQM ETGHEETVLS TASLVSNHGF DKKDPPGYKV EQVKNWICSV GCDTQPEKPS RDYHLEEPAN
201: IRVEHNARCG GDERRSFLGI NTTWQMMQLP PSFYSSSHHH HQRNLILNSP TVSSNMSNSN NAVSASKDTV TVSPVFLRTR EATNTETCHR NGDDNKDQEQ
301: HEDCSNGELD HQEQTLELFP LRKEGFCSDG EKDKNISGIH CFYEFLPLKN

Arabidopsis Description

WOX1WUSCHEL-related homeobox 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6X7K0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.