Factsheet for TraesCS1D01G406900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G427400.1	Wheat	nucleus, plastid	93.0	93.2
HORVU1Hr1G087950.1	Barley	nucleus	24.69	93.02
TraesCS1A01G399400.1	Wheat	nucleus	93.0	93.0
Os05t0564500-00	Rice	mitochondrion, nucleus, peroxisome	12.14	90.77
KXG22537	Sorghum	plastid	38.27	37.5
AT5G45980.1	Thale cress	nucleus	23.25	34.77
Zm00001d039017_P001	Maize	nucleus	34.57	34.08
CDX87744	Canola	nucleus	22.43	34.06
Solyc02g077390.1.1	Tomato	nucleus	24.9	33.8
CDY48780	Canola	nucleus	22.22	33.75
KRH30862	Soybean	nucleus	27.57	33.5
Bra022008.1-P	Field mustard	nucleus	21.19	33.44
KRH32713	Soybean	nucleus	27.37	33.0
KRH50138	Soybean	nucleus	26.13	32.73
KRH20358	Soybean	nucleus	26.13	32.65
PGSC0003DMT400027850	Potato	nucleus	22.22	32.43
GSMUA_Achr9P06660_001	Banana	nucleus	25.1	31.52
VIT_10s0003g00560.t01	Wine grape	nucleus	25.72	30.34
TraesCS3D01G244300.1	Wheat	nucleus, plastid	31.28	29.63
TraesCS3D01G073300.1	Wheat	nucleus	15.02	27.97
GSMUA_Achr8P27170_001	Banana	nucleus	25.31	27.52
TraesCS2D01G100200.1	Wheat	nucleus	14.2	26.14
TraesCS4D01G176400.1	Wheat	nucleus	16.05	25.49
TraesCS5D01G162600.1	Wheat	nucleus	9.26	18.59
TraesCS3D01G361100.1	Wheat	nucleus	7.2	16.67
TraesCS2D01G515600.1	Wheat	plastid	7.2	14.77
TraesCS3D01G335500.1	Wheat	nucleus	7.82	14.45
TraesCS1D01G054000.1	Wheat	nucleus	7.82	14.23
TraesCS3D01G352500.1	Wheat	nucleus	8.64	14.09
TraesCS3D01G352600.1	Wheat	nucleus	8.23	14.04
TraesCS5D01G097400.1	Wheat	nucleus	8.64	13.04
TraesCS3D01G352700.1	Wheat	nucleus	7.0	11.68

Protein Annotations

EnsemblPlants:TraesCS1D01G406900.1	EnsemblPlantsGene:TraesCS1D01G406900	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	PANTHER:PTHR24326	PANTHER:PTHR24326:SF308
PFAM:PF00046	PFscan:PS50071	SEG:seg	SMART:SM00389	SUPFAM:SSF46689	TIGR:cd00086
MapMan:15.5.3.6	:	:	:	:	:

Description

No Description!

Coordinates

chr1D:+:470219878..470224114

Molecular Weight (calculated)

50826.5 Da

IEP (calculated)

7.989

GRAVY (calculated)

-0.151

Length

486 amino acids

Sequence
(BLAST)

001: MASSNKHWPS MFRSNPAACD FHHQPDMSNT HTRPSLISSG LDQETTRSPG ETKPRWNPRP EQIRILEGIF NSGVVNPPRD EIRRIRLRLQ EYGHVADANV
101: FYWFQNRKSR TKNKLRAAAA AAAAQGQQPT GGRAAVMRAS LAVRTPALAP VTPPRRFLAP CGTLQAPTSS SSSSSDRSSG SSRSVTMKTT AMASSAVASL
201: SQPMLPLSTA AIDLFAPAPP PLTPSPGLSA CQLYYQLQNH PMTSMPTPTP VRELVTSTPE PAPLLPQWPP QSQCQYLPAT ELGGFLGSHG HTHPTAVSPG
301: ALLLSGLCTD SVLGQHEIVD DMSCSKLGLG VGGQYHFNVP ADPPSDAVSA VIKDDEKARL EFLHHYGLGA TAGADVSATA LPCTPPIGNA AASSAFTDQL
401: QGLLDAGLLT GGGAPVPTAT VVAVAAGRPG APVQCYSVPA MARMDVKALF GPAAVLLGQT GEAIPVDGAG VTAEPLQNGA CYYVLM

Best Arabidopsis Sequence Match ( AT2G33880.1 )
(BLAST)

001: MASSNRHWPS MFKSKPHPHQ WQHDINSPLL PSASHRSSPF SSGCEVERSP EPKPRWNPKP EQIRILEAIF NSGMVNPPRE EIRRIRAQLQ EYGQVGDANV
101: FYWFQNRKSR SKHKLRLLHN HSKHSLPQTQ PQPQPQPSAS SSSSSSSSSS KSTKPRKSKN KNNTNLSLGG SQMMGMFPPE PAFLFPVSTV GGFEGITVSS
201: QLGFLSGDMI EQQKPAPTCT GLLLSEIMNG SVSYGTHHQQ HLSEKEVEEM RMKMLQQPQT QICYATTNHQ IASYNNNNNN NNIMLHIPPT TSTATTITTS
301: HSLATVPSTS DQLQVQADAR IRVFINEMEL EVSSGPFNVR DAFGEEVVLI NSAGQPIVTD EYGVALHPLQ HGASYYLI

Arabidopsis Description

WOX9WOX9A [Source:UniProtKB/TrEMBL;Acc:A0A178VQA8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.