Factsheet for TraesCS1B01G427400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G399400.1	Wheat	nucleus	93.4	93.21
TraesCS1D01G406900.1	Wheat	nucleus	93.2	93.0
HORVU1Hr1G087950.1	Barley	nucleus	24.33	91.47
Os05t0564500-00	Rice	mitochondrion, nucleus, peroxisome	11.96	89.23
KXG22537	Sorghum	plastid	36.49	35.69
Solyc02g077390.1.1	Tomato	nucleus	24.95	33.8
KRH30862	Soybean	nucleus	27.84	33.75
AT5G45980.1	Thale cress	nucleus	22.47	33.54
KRH32713	Soybean	nucleus	27.42	33.0
CDX87744	Canola	nucleus	21.65	32.81
CDY48780	Canola	nucleus	21.44	32.5
Zm00001d039017_P001	Maize	nucleus	32.99	32.45
KRH20358	Soybean	nucleus	25.98	32.39
KRH50138	Soybean	nucleus	25.77	32.22
Bra022008.1-P	Field mustard	nucleus	20.41	32.14
PGSC0003DMT400027850	Potato	nucleus	21.86	31.83
GSMUA_Achr9P06660_001	Banana	nucleus	24.33	30.49
VIT_10s0003g00560.t01	Wine grape	nucleus	25.36	29.85
TraesCS3B01G272200.1	Wheat	nucleus, plastid	31.55	29.71
TraesCS3B01G087800.1	Wheat	nucleus	15.26	28.35
TraesCS2B01G117900.1	Wheat	nucleus	14.64	27.2
GSMUA_Achr8P27170_001	Banana	nucleus	24.95	27.07
TraesCS4B01G174400.1	Wheat	nucleus	16.08	25.24
TraesCS5B01G156400.1	Wheat	nucleus	9.28	18.67
TraesCS3B01G399800.1	Wheat	nucleus	7.22	16.75
TraesCS1B01G069000.1	Wheat	nucleus, plastid	8.45	15.53
TraesCS3B01G373800.1	Wheat	nucleus	8.04	14.94
TraesCS2B01G542600.1	Wheat	plastid	7.01	14.35
TraesCS3B01G391100.1	Wheat	nucleus	8.25	13.38
TraesCS5B01G091000.1	Wheat	nucleus	8.66	13.08
TraesCS3B01G391200.1	Wheat	nucleus	7.63	12.76

Protein Annotations

EnsemblPlants:TraesCS1B01G427400.1	EnsemblPlantsGene:TraesCS1B01G427400	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	PANTHER:PTHR24326	PANTHER:PTHR24326:SF308
PFAM:PF00046	PFscan:PS50071	SEG:seg	SMART:SM00389	SUPFAM:SSF46689	TIGR:cd00086
MapMan:15.5.3.6	:	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:652781869..652786461

Molecular Weight (calculated)

50613.2 Da

IEP (calculated)

7.856

GRAVY (calculated)

-0.140

Length

485 amino acids

Sequence
(BLAST)

001: MASSNKHWPS MFRSNPAACD FHHQPDMSNT HTRSSLISSG LDQETTRSPG ETKPRWNPRP EQIWILEGIF NSGVVNPPRD EIRRIRLRLQ EYGHVADANV
101: FYWFQNRKSR TKNKLRAAAA AAAAQGQQPT GGRAAVMRAS LAVRMPAPAP VTPPRRFLAP SGTLQAPTSS SSSSSDRSSG SSRSVTMKTT AMASAAAASL
201: SQPMLPLSTA AIDLFAPAPP LTPSPGLSAC QLYYQLQNNP MSSMPTPTPV RELVTSIPEQ PPLHLQWPPQ SQSQYLPATE LGGFLGSHAH THPTAVSPGA
301: LLLPGLCTDS ALGQHEIVDD MSSSKLGLGV GGQFNFNVAA DPPSDAVSAV IKDDEKARLG FLHHYGLGAT AGADVSAAVL PCTPPTGNAA ASSAFTDQLQ
401: GLLDAGLLAG GGAPTPMATV VTVAAGRPGA PVQCYSVPAM VCMDVKALFG PAAVMLGQTG EAIPVDGAGV TAEPLQNGAC YYVLM

Best Arabidopsis Sequence Match ( AT5G45980.1 )
(BLAST)

001: MSSSNKNWPS MFKSKPCNNN HHHQHEIDTP SYMHYSNCNL SSSFSSDRIP DPKPRWNPKP EQIRILESIF NSGTINPPRE EIQRIRIRLQ EYGQIGDANV
101: FYWFQNRKSR AKHKLRVHHK SPKMSKKDKT VIPSTDADHC FGFVNQETGL YPVQNNELVV TEPAGFLFPV HNDPSAAQSA FGFGDFVVPV VTEEGMAFST
201: VNNGVNLETN ENFDKIPAIN LYGGDGNGGG NCFPPLTVPL TINQSQEKRD VGLSGGEDVG DNVYPVRMTV FINEMPIEVV SGLFNVKAAF GNDAVLINSF
301: GQPILTDEFG VTYQPLQNGA IYYLI

Arabidopsis Description

WOX8WUSCHEL-related homeobox 8 [Source:UniProtKB/Swiss-Prot;Acc:Q6X7J5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.