Factsheet for TraesCS5B01G156400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G157300.1	Wheat	nucleus	97.93	97.93
TraesCS5D01G162600.1	Wheat	nucleus	97.51	97.11
HORVU5Hr1G049190.2	Barley	nucleus	66.81	86.56
Os11t0102100-01	Rice	nucleus	58.51	60.26
Os12t0101600-01	Rice	nucleus	58.51	60.26
GSMUA_Achr4P30610_001	Banana	nucleus	45.23	59.24
OQU82902	Sorghum	nucleus	63.9	59.23
Zm00001d004889_P001	Maize	nucleus	64.32	59.16
GSMUA_Achr8P02040_001	Banana	nucleus	30.71	57.81
Zm00001d052598_P001	Maize	nucleus	63.49	57.74
GSMUA_Achr2P16080_001	Banana	nucleus	46.47	57.73
GSMUA_Achr9P04090_001	Banana	nucleus	45.23	57.67
TraesCS1B01G069000.1	Wheat	nucleus, plastid	39.42	35.98
TraesCS3B01G399800.1	Wheat	nucleus	20.75	23.92
TraesCS3B01G391200.1	Wheat	nucleus	24.9	20.69
TraesCS2B01G542600.1	Wheat	plastid	20.33	20.68
TraesCS3B01G391100.1	Wheat	nucleus	25.31	20.4
TraesCS5B01G091000.1	Wheat	nucleus	26.14	19.63
TraesCS2B01G117900.1	Wheat	nucleus	16.18	14.94
TraesCS3B01G087800.1	Wheat	nucleus	15.35	14.18
TraesCS3B01G373800.1	Wheat	nucleus	14.11	13.03
TraesCS4B01G174400.1	Wheat	nucleus	16.18	12.62
TraesCS1B01G427400.1	Wheat	nucleus, plastid	18.67	9.28
TraesCS3B01G272200.1	Wheat	nucleus, plastid	19.5	9.13

Protein Annotations

EnsemblPlants:TraesCS5B01G156400.1	EnsemblPlantsGene:TraesCS5B01G156400	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	PANTHER:PTHR24326	PANTHER:PTHR24326:SF336
PFAM:PF00046	PFscan:PS50071	SEG:seg	SMART:SM00389	SUPFAM:SSF46689	TIGR:cd00086
MapMan:15.5.3.6	:	:	:	:	:

Description

No Description!

Coordinates

chr5B:-:288892045..288892905

Molecular Weight (calculated)

25900.6 Da

IEP (calculated)

8.889

GRAVY (calculated)

-0.582

Length

241 amino acids

Sequence
(BLAST)

001: MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NAAEIQQITA HLAYYGRIEG KNVFYWFQNH KARERQRLRR RLCARHQQPS SPAAPPPPPP HTGAAGGGGN
101: AAGAGAGVNA MHPAVMQLHH HHHTYATSCF MAPQGYLQQE TAAAGALPVS GLEFAGKTSQ QQEWMMQQQM VMDNSNINNS VAAAGGSSAA AGGGMNNMTP
201: PPWPCCRPLR TLELFPTKST GGGLRDECSS SKSSSCSTST N

Best Arabidopsis Sequence Match ( AT2G28610.1 )
(BLAST)

001: MSPVASTRWC PTPEQLMILE EMYRSGIRTP NAVQIQQITA HLAFYGRIEG KNVFYWFQNH KARDRQKLRK KLAKQLHQQQ HQLQLQLQQI KPKPISSMIS
101: QPVNKNIIDH HNPYHHHHHN HHHNHHRPYD HMSFDCCSHP SPMCLPHQGT GVGEAPSKVM NEYYCTKSGA EEILMQKSIT GPNSSYGRDW MMMMDMGPRP
201: SYPSSSSSPI SCCNMMMSSP KIPLKTLELF PISSINSKQD STKL

Arabidopsis Description

WOX3Homeobox-leucine zipper transcription factor [Source:UniProtKB/TrEMBL;Acc:Q1PEZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.