Factsheet for GSMUA_Achr4P30610_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P16080_001	Banana	nucleus	85.87	81.44
GSMUA_Achr8P02040_001	Banana	nucleus	41.3	59.38
GSMUA_Achr9P04090_001	Banana	nucleus	58.15	56.61
GSMUA_Achr7P18230_001	Banana	nucleus	57.07	54.4
GSMUA_Achr5P29220_001	Banana	nucleus	50.54	46.5
TraesCS5B01G156400.1	Wheat	nucleus	59.24	45.23
TraesCS5A01G157300.1	Wheat	nucleus	59.24	45.23
TraesCS5D01G162600.1	Wheat	nucleus	59.24	45.04
OQU82902	Sorghum	nucleus	60.87	43.08
Zm00001d004889_P001	Maize	nucleus	60.87	42.75
Zm00001d052598_P001	Maize	nucleus	59.78	41.51
Os11t0102100-01	Rice	nucleus	51.63	40.6
Os12t0101600-01	Rice	nucleus	51.63	40.6
HORVU5Hr1G049190.2	Barley	nucleus	40.22	39.78
GSMUA_Achr7P07430_001	Banana	nucleus	26.63	34.27
GSMUA_Achr7P14860_001	Banana	nucleus	29.89	28.95
GSMUA_Achr10P...	Banana	nucleus	29.35	23.18
GSMUA_Achr8P15620_001	Banana	nucleus, plastid	28.26	22.22
GSMUA_Achr4P29470_001	Banana	nucleus	14.67	16.36
GSMUA_Achr1P17980_001	Banana	nucleus	19.02	14.77
GSMUA_Achr10P...	Banana	nucleus	19.02	14.34
GSMUA_Achr4P25530_001	Banana	nucleus	16.3	14.22
GSMUA_Achr7P04050_001	Banana	nucleus	16.85	13.25
GSMUA_AchrUn_...	Banana	nucleus	20.11	13.03
GSMUA_Achr5P11080_001	Banana	nucleus	15.22	12.73
GSMUA_Achr10P...	Banana	nucleus	18.48	12.45
GSMUA_Achr3P14840_001	Banana	nucleus	19.02	12.37
GSMUA_Achr10P...	Banana	nucleus	17.39	12.03
GSMUA_Achr3P09460_001	Banana	nucleus	19.02	10.94
GSMUA_Achr5P27730_001	Banana	nucleus	18.48	10.9
GSMUA_Achr9P06660_001	Banana	nucleus	22.28	10.59
GSMUA_Achr6P15910_001	Banana	nucleus	17.93	10.41
GSMUA_Achr9P05010_001	Banana	nucleus, plastid	19.57	9.92
GSMUA_Achr8P27170_001	Banana	nucleus	22.28	9.17
GSMUA_Achr8P01590_001	Banana	nucleus	19.57	8.57

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSMUA_Achr4G30610_001	EnsemblPlants:GSMUA_Achr4P30610_001
EnsemblPlants:GSMUA_Achr4T30610_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M0STH3	PFAM:PF00046
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF336	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000295A38F
SEG:seg	:	:	:	:	:

Description

PRESSED FLOWER a [Source:GMGC_GENE;Acc:GSMUA_Achr4G30610_001]

Coordinates

chr4:-:28110211..28110838

Molecular Weight (calculated)

20656.4 Da

IEP (calculated)

8.293

GRAVY (calculated)

-0.795

Length

184 amino acids

Sequence
(BLAST)

001: MPQTTPSTRW CPTPEQLMIL EEMYRSGVRT PNASQIQQIT AHLSLYGKIE GKNVFYWFQN HKARERQKLR RRLGWQHQLL HQSEGPSSPT PPLHHQTPPN
101: FPYQGCFHEV SSQGMNLVGK LEAIQGQEEE PTGRNVLYAQ PCGSTDGPPC CRPLRTLDLF PTKSTGMADE CSSSKSSACS TSTN

Best Arabidopsis Sequence Match ( AT2G28610.1 )
(BLAST)

001: MSPVASTRWC PTPEQLMILE EMYRSGIRTP NAVQIQQITA HLAFYGRIEG KNVFYWFQNH KARDRQKLRK KLAKQLHQQQ HQLQLQLQQI KPKPISSMIS
101: QPVNKNIIDH HNPYHHHHHN HHHNHHRPYD HMSFDCCSHP SPMCLPHQGT GVGEAPSKVM NEYYCTKSGA EEILMQKSIT GPNSSYGRDW MMMMDMGPRP
201: SYPSSSSSPI SCCNMMMSSP KIPLKTLELF PISSINSKQD STKL

Arabidopsis Description

WOX3Homeobox-leucine zipper transcription factor [Source:UniProtKB/TrEMBL;Acc:Q1PEZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.