Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P29470_001 | Banana | nucleus | 57.82 | 73.94 |
| GSMUA_Achr5P11080_001 | Banana | nucleus | 60.19 | 57.73 |
| HORVU3Hr1G080690.1 | Barley | nucleus | 32.7 | 53.08 |
| TraesCSU01G204800.1 | Wheat | nucleus | 38.39 | 51.92 |
| Bra012245.1-P | Field mustard | nucleus | 32.7 | 51.88 |
| CDY01358 | Canola | nucleus | 32.7 | 51.88 |
| GSMUA_Achr1P17980_001 | Banana | nucleus | 55.45 | 49.37 |
| GSMUA_Achr7P04050_001 | Banana | nucleus | 54.03 | 48.72 |
| Os01t0818400-01 | Rice | nucleus | 59.72 | 47.19 |
| TraesCS3B01G373800.1 | Wheat | nucleus | 55.45 | 44.83 |
| HORVU3Hr1G080660.5 | Barley | nucleus | 56.87 | 44.78 |
| TraesCS3D01G335500.1 | Wheat | nucleus | 55.45 | 44.49 |
| TraesCS3A01G341700.1 | Wheat | nucleus | 55.45 | 44.15 |
| GSMUA_AchrUn_... | Banana | nucleus | 58.77 | 43.66 |
| AT1G20710.1 | Thale cress | nucleus | 40.28 | 43.15 |
| GSMUA_Achr10P... | Banana | nucleus | 55.45 | 42.86 |
| GSMUA_Achr3P14840_001 | Banana | nucleus | 56.87 | 42.4 |
| CDY31870 | Canola | nucleus | 38.86 | 42.05 |
| CDX93197 | Canola | nucleus | 38.86 | 42.05 |
| Zm00001d043076_P001 | Maize | nucleus | 54.03 | 41.76 |
| EES01660 | Sorghum | nucleus | 54.98 | 41.73 |
| Zm00001d012516_P001 | Maize | nucleus | 54.98 | 41.13 |
| Bra025839.1-P | Field mustard | nucleus | 39.34 | 40.89 |
| CDY29511 | Canola | nucleus | 39.34 | 40.89 |
| CDY65899 | Canola | nucleus | 40.28 | 40.67 |
| AT1G20700.1 | Thale cress | nucleus | 40.28 | 40.28 |
| GSMUA_Achr8P02040_001 | Banana | nucleus | 14.22 | 23.44 |
| GSMUA_Achr7P07430_001 | Banana | nucleus | 13.74 | 20.28 |
| GSMUA_Achr9P04090_001 | Banana | nucleus | 16.11 | 17.99 |
| GSMUA_Achr5P29220_001 | Banana | nucleus | 16.11 | 17.0 |
| GSMUA_Achr4P30610_001 | Banana | nucleus | 14.22 | 16.3 |
| GSMUA_Achr7P18230_001 | Banana | nucleus | 14.22 | 15.54 |
| GSMUA_Achr2P16080_001 | Banana | nucleus | 14.22 | 15.46 |
| GSMUA_Achr7P14860_001 | Banana | nucleus | 13.74 | 15.26 |
| GSMUA_Achr8P15620_001 | Banana | nucleus, plastid | 16.59 | 14.96 |
| GSMUA_Achr10P... | Banana | nucleus | 15.64 | 13.52 |
| GSMUA_Achr10P... | Banana | nucleus | 14.22 | 12.88 |
| GSMUA_Achr10P... | Banana | nucleus | 14.69 | 11.65 |
| GSMUA_Achr3P09460_001 | Banana | nucleus | 17.54 | 11.56 |
| GSMUA_Achr5P27730_001 | Banana | nucleus | 17.06 | 11.54 |
| GSMUA_Achr6P15910_001 | Banana | nucleus | 15.64 | 10.41 |
| GSMUA_Achr9P05010_001 | Banana | nucleus, plastid | 17.54 | 10.19 |
| GSMUA_Achr9P06660_001 | Banana | nucleus | 17.54 | 9.56 |
| GSMUA_Achr8P27170_001 | Banana | nucleus | 18.48 | 8.72 |
| GSMUA_Achr8P01590_001 | Banana | nucleus | 17.06 | 8.57 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.6 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr4G25530_001 |
| EnsemblPlants:GSMUA_Achr4P25530_001 | EnsemblPlants:GSMUA_Achr4T25530_001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | UniProt:M0SS14 |
| PFAM:PF00046 | PFscan:PS50071 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF340 | SMART:SM00389 | SUPFAM:SSF46689 |
| UniParc:UPI000296F47B | SEG:seg | : | : | : | : |
Description
DNA binding protein, putative [Source:GMGC_GENE;Acc:GSMUA_Achr4G25530_001]
Coordinates
chr4:+:25018918..25020056
Molecular Weight (calculated)
23112.1 Da
IEP (calculated)
4.976
GRAVY (calculated)
-0.618
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEGVAEEGA VCAKVMTDEQ MEVLRKQIAA YATICEQLVE MHRAIAAQQD SLSGMRLGSL CSDPLMAPGV AKLSSRQRWT PTPTQLQILE TIFYEGNGTP
101: SKQKIKEITS ELSQHGQISE TNVYNWFQNR RARSKRKKQP GAGPNAAESE AEVESLNEKK AKAHGNLSPT VDDGPFQSPD ISSELRFADP ESNGSQSMFA
201: LGDISKYGDA F
101: SKQKIKEITS ELSQHGQISE TNVYNWFQNR RARSKRKKQP GAGPNAAESE AEVESLNEKK AKAHGNLSPT VDDGPFQSPD ISSELRFADP ESNGSQSMFA
201: LGDISKYGDA F
001: MMEWDNQLQP NNHHSSNLQG IDVNGGSGAG GGMYVKVMTD EQYETLRKQI AIYGTICERL VEMHKTLTAQ QDLAGGRMGG LYADPMMSSL GHKMTARQRW
101: TPTPVQLQIL ERIFDQGTGT PSKQKIKDIT EELSQHGQIA EQNVYNWFQN RRARSKRKQH GGGSSGNNNG ESEVETEVEA LNEKRVVRPE SLLGLPDGNS
201: NNNGLGTTTA TTTAPRPEDL CFQSPEISSD LHLLDVLSNP RDEHLVGKMG LAESYNLYDH VEDYGMSG
101: TPTPVQLQIL ERIFDQGTGT PSKQKIKDIT EELSQHGQIA EQNVYNWFQN RRARSKRKQH GGGSSGNNNG ESEVETEVEA LNEKRVVRPE SLLGLPDGNS
201: NNNGLGTTTA TTTAPRPEDL CFQSPEISSD LHLLDVLSNP RDEHLVGKMG LAESYNLYDH VEDYGMSG
Arabidopsis Description
WOX13WOX13 [Source:UniProtKB/TrEMBL;Acc:A0A178UZQ1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.