Factsheet for GSMUA_Achr8P02040_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P04090_001	Banana	nucleus	65.62	44.44
GSMUA_Achr4P30610_001	Banana	nucleus	59.38	41.3
GSMUA_Achr7P18230_001	Banana	nucleus	60.16	39.9
GSMUA_Achr2P16080_001	Banana	nucleus	60.16	39.69
HORVU5Hr1G049190.2	Barley	nucleus	54.69	37.63
GSMUA_Achr5P29220_001	Banana	nucleus	50.78	32.5
Os12t0101600-01	Rice	nucleus	56.25	30.77
Os11t0102100-01	Rice	nucleus	56.25	30.77
GSMUA_Achr7P07430_001	Banana	nucleus	34.38	30.77
TraesCS5B01G156400.1	Wheat	nucleus	57.81	30.71
TraesCS5A01G157300.1	Wheat	nucleus	57.81	30.71
TraesCS5D01G162600.1	Wheat	nucleus	57.81	30.58
OQU82902	Sorghum	nucleus	57.81	28.46
Zm00001d004889_P001	Maize	nucleus	57.81	28.24
Zm00001d052598_P001	Maize	nucleus	57.03	27.55
GSMUA_Achr7P14860_001	Banana	nucleus	34.38	23.16
GSMUA_Achr10P...	Banana	nucleus	36.72	20.17
GSMUA_Achr8P15620_001	Banana	nucleus, plastid	35.94	19.66
GSMUA_Achr4P29470_001	Banana	nucleus	21.88	16.97
GSMUA_Achr4P25530_001	Banana	nucleus	23.44	14.22
GSMUA_Achr1P17980_001	Banana	nucleus	25.78	13.92
GSMUA_Achr5P11080_001	Banana	nucleus	21.88	12.73
GSMUA_Achr10P...	Banana	nucleus	24.22	12.7
GSMUA_Achr7P04050_001	Banana	nucleus	22.66	12.39
GSMUA_AchrUn_...	Banana	nucleus	27.34	12.32
GSMUA_Achr10P...	Banana	nucleus	25.0	11.72
GSMUA_Achr3P14840_001	Banana	nucleus	25.0	11.31
GSMUA_Achr10P...	Banana	nucleus	21.88	10.53
GSMUA_Achr5P27730_001	Banana	nucleus	24.22	9.94
GSMUA_Achr3P09460_001	Banana	nucleus	24.22	9.69
GSMUA_Achr9P06660_001	Banana	nucleus	28.12	9.3
GSMUA_Achr6P15910_001	Banana	nucleus	22.66	9.15
GSMUA_Achr8P27170_001	Banana	nucleus	30.47	8.72
GSMUA_Achr9P05010_001	Banana	nucleus, plastid	21.88	7.71
GSMUA_Achr8P01590_001	Banana	nucleus	23.44	7.14

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSMUA_Achr8G02040_001	EnsemblPlants:GSMUA_Achr8P02040_001
EnsemblPlants:GSMUA_Achr8T02040_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M0TLV6	PFAM:PF00046
PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF115	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000294E762
SEG:seg	:	:	:	:	:

Description

Putative WUSCHEL-related homeobox 2 [Source:GMGC_GENE;Acc:GSMUA_Achr8G02040_001]

Coordinates

chr8:+:1508845..1509231

Molecular Weight (calculated)

15020.9 Da

IEP (calculated)

10.117

GRAVY (calculated)

-0.755

Length

128 amino acids

Sequence
(BLAST)

001: MPQSPSSRWC PTPEQLMILE EMYRSGVRTP SAQQIQQVTA HLSNYGRIEG KNVFYWFQNH KARERQKLRR RLSRHYQLLC SGHSLPHHQL YCMQDATAFP
101: HSQHHATPTH SLHLVLHSHP ALFLPSHQ

Best Arabidopsis Sequence Match ( AT2G28610.1 )
(BLAST)

001: MSPVASTRWC PTPEQLMILE EMYRSGIRTP NAVQIQQITA HLAFYGRIEG KNVFYWFQNH KARDRQKLRK KLAKQLHQQQ HQLQLQLQQI KPKPISSMIS
101: QPVNKNIIDH HNPYHHHHHN HHHNHHRPYD HMSFDCCSHP SPMCLPHQGT GVGEAPSKVM NEYYCTKSGA EEILMQKSIT GPNSSYGRDW MMMMDMGPRP
201: SYPSSSSSPI SCCNMMMSSP KIPLKTLELF PISSINSKQD STKL

Arabidopsis Description

WOX3Homeobox-leucine zipper transcription factor [Source:UniProtKB/TrEMBL;Acc:Q1PEZ2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.