Factsheet for TraesCS3B01G272200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G247200.1	Wheat	nucleus, plastid	95.53	95.53
TraesCS3D01G244300.1	Wheat	nucleus, plastid	94.76	95.13
HORVU3Hr1G060950.1	Barley	nucleus, plastid	91.84	91.67
Os07t0533201-00	Rice	mitochondrion, nucleus, peroxisome	10.68	84.62
OQU87296	Sorghum	plastid	54.56	52.72
Os01t0667400-02	Rice	plastid	40.0	38.65
KRH30862	Soybean	nucleus	27.77	35.75
KRH32713	Soybean	nucleus	27.96	35.73
Solyc02g077390.1.1	Tomato	nucleus	24.27	34.92
GSMUA_Achr9P06660_001	Banana	nucleus	25.63	34.11
VIT_10s0003g00560.t01	Wine grape	nucleus	27.18	33.98
CDX87744	Canola	nucleus	20.97	33.75
KRH50138	Soybean	nucleus	25.24	33.51
Bra022008.1-P	Field mustard	nucleus	20.0	33.44
CDY48780	Canola	nucleus	20.78	33.44
KRH20358	Soybean	nucleus	25.24	33.42
AT5G45980.1	Thale cress	nucleus	20.58	32.62
PGSC0003DMT400027850	Potato	nucleus	20.97	32.43
TraesCS1B01G427400.1	Wheat	nucleus, plastid	29.71	31.55
GSMUA_Achr8P27170_001	Banana	nucleus	26.02	29.98
TraesCS3B01G087800.1	Wheat	nucleus	14.17	27.97
TraesCS2B01G117900.1	Wheat	nucleus	13.2	26.05
TraesCS4B01G174400.1	Wheat	nucleus	13.79	22.98
TraesCS5B01G156400.1	Wheat	nucleus	9.13	19.5
TraesCS3B01G399800.1	Wheat	nucleus	7.38	18.18
TraesCS1B01G069000.1	Wheat	nucleus, plastid	8.54	16.67
TraesCS3B01G373800.1	Wheat	nucleus	7.77	15.33
TraesCS2B01G542600.1	Wheat	plastid	6.99	15.19
TraesCS3B01G391100.1	Wheat	nucleus	8.54	14.72
TraesCS5B01G091000.1	Wheat	nucleus	8.74	14.02
TraesCS3B01G391200.1	Wheat	nucleus	7.57	13.45

Protein Annotations

EnsemblPlants:TraesCS3B01G272200.1	EnsemblPlantsGene:TraesCS3B01G272200	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	PANTHER:PTHR24326	PANTHER:PTHR24326:SF308
PFAM:PF00046	PFscan:PS50071	SEG:seg	SMART:SM00389	SUPFAM:SSF46689	TIGR:cd00086
MapMan:15.5.3.6	:	:	:	:	:

Description

No Description!

Coordinates

chr3B:-:438379125..438382220

Molecular Weight (calculated)

53646.0 Da

IEP (calculated)

7.796

GRAVY (calculated)

-0.184

Length

515 amino acids

Sequence
(BLAST)

001: MASPNSRQQQ QHWPSMFRSK HGSQVWQSQP DMTSSPPSLV SGSTAAAGHS FKSPFSSGPD QERNTDTKPR WNPRPEQIRI LETLFNSGLI NPTRDEIPRI
101: RMRLQEYGPV GDSNVFYWFQ NRKSRSKNKL RNAAARVAPV RACAPARQQA AAPYTPPPKQ FHPPKPPLFS PVAPTSSSSS SSDRSSGSSK PVKPAATQAM
201: SATAAMDLLS PLAAACHQQM HYQFGLSQHA VSASAPAPAP APTLDEFVAT DVEPIFLQYP QGHCLSAGEL ATILGAQYMP VPAVQQPPVA SPAGMLLGLC
301: NDVALGPTST GHRSSASAAG LGQYWSSGVD QLGLRKNSDP FLNTSVAKEE AYEDFTKTKL GLVQYGLGVT AAPATSAAAV LPPAASPDSA AVTVASASAT
401: AELTSLFATT ATTDAISYNS NLQGPADDVG FAGAAAAAGA GATGVLGRGA AVVCFAGTSA ACSVPATHLD VKLYFGDGAV LFRCNGDRAE PLVVDDAGLT
501: VEPLQHGGVY YCVLI

Best Arabidopsis Sequence Match ( AT5G45980.1 )
(BLAST)

001: MSSSNKNWPS MFKSKPCNNN HHHQHEIDTP SYMHYSNCNL SSSFSSDRIP DPKPRWNPKP EQIRILESIF NSGTINPPRE EIQRIRIRLQ EYGQIGDANV
101: FYWFQNRKSR AKHKLRVHHK SPKMSKKDKT VIPSTDADHC FGFVNQETGL YPVQNNELVV TEPAGFLFPV HNDPSAAQSA FGFGDFVVPV VTEEGMAFST
201: VNNGVNLETN ENFDKIPAIN LYGGDGNGGG NCFPPLTVPL TINQSQEKRD VGLSGGEDVG DNVYPVRMTV FINEMPIEVV SGLFNVKAAF GNDAVLINSF
301: GQPILTDEFG VTYQPLQNGA IYYLI

Arabidopsis Description

WOX8WUSCHEL-related homeobox 8 [Source:UniProtKB/Swiss-Prot;Acc:Q6X7J5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.