Factsheet for TraesCS5D01G097400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G085000.1	Wheat	nucleus	93.48	94.65
TraesCS5B01G091000.1	Wheat	nucleus	91.3	91.59
Os01t0840300-00	Rice	cytosol, mitochondrion, nucleus	18.01	89.23
HORVU5Hr1G022120.1	Barley	nucleus	67.7	78.99
TraesCS3D01G352600.1	Wheat	nucleus	48.45	54.74
TraesCS3D01G352500.1	Wheat	nucleus	45.96	49.66
TraesCS3D01G352700.1	Wheat	nucleus	44.72	49.48
Zm00001d042920_P001	Maize	nucleus	48.76	48.46
OQU87830	Sorghum	nucleus	47.52	45.0
Zm00001d012419_P001	Maize	nucleus	45.96	43.15
TraesCS5D01G162600.1	Wheat	nucleus	19.57	26.03
TraesCS2D01G515600.1	Wheat	plastid	18.94	25.74
TraesCS3D01G361100.1	Wheat	nucleus	16.46	25.24
TraesCS1D01G054000.1	Wheat	nucleus	18.32	22.1
TraesCS3D01G335500.1	Wheat	nucleus	12.42	15.21
TraesCS2D01G100200.1	Wheat	nucleus	10.25	12.5
TraesCS4D01G176400.1	Wheat	nucleus	11.8	12.42
TraesCS3D01G073300.1	Wheat	nucleus	9.94	12.26
TraesCS1D01G406900.1	Wheat	nucleus	13.04	8.64
TraesCS3D01G244300.1	Wheat	nucleus, plastid	13.35	8.38

Protein Annotations

EnsemblPlants:TraesCS5D01G097400.1	EnsemblPlantsGene:TraesCS5D01G097400	Gene3D:1.10.10.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	PANTHER:PTHR24326	PANTHER:PTHR24326:SF203
PFAM:PF00046	PFscan:PS50071	SEG:seg	SMART:SM00389	SUPFAM:SSF46689	MapMan:15.5.3.6

Description

No Description!

Coordinates

chr5D:+:108103393..108105589

Molecular Weight (calculated)

34477.5 Da

IEP (calculated)

10.694

GRAVY (calculated)

-0.646

Length

322 amino acids

Sequence
(BLAST)

001: MESVEHQQQA ATRSRSPSLP AAPPSPPLSP NSAAAAALAN ARWTPTKEQV GVLEGLYRQG LRTPTAEQIQ QVTARLQKHG PIEGKNVFYW FQNHKARQRQ
101: RQKQQAFDYF SKQFRRPQPL PVLHRPAAHP SLPPIPLHAP PPPPSHVSSA TTPDPPAPPA CNRQAMYGQQ PSYVTAAAAV AATQAAANAS YYMQTQAQAP
201: MLHPRVEAVA HDKAQTQAQA TMYHQAAAPN SAGTQQPRAL QLPPAAGTHG PPAARSRRPE TLNLFPLHPT FAIPEKPRPA GIAGSATPTG PSASGSGSFS
301: WEPESPRGDA PLPLYDFFGA GR

Best Arabidopsis Sequence Match ( AT5G59340.1 )
(BLAST)

001: MENEVNAGTA SSSRWNPTKD QITLLENLYK EGIRTPSADQ IQQITGRLRA YGHIEGKNVF YWFQNHKARQ RQKQKQERMA YFNRLLHKTS RFFYPPPCSN
101: VGCVSPYYLQ QASDHHMNQH GSVYTNDLLH RNNVMIPSGG YEKRTVTQHQ KQLSDIRTTA ATRMPISPSS LRFDRFALRD NCYAGEDINV NSSGRKTLPL
201: FPLQPLNASN ADGMGSSSFA LGSDSPVDCS SDGAGREQPF IDFFSGGSTS TRFDSNGNGL

Arabidopsis Description

WOX2WUSCHEL-related homeobox 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6X7K1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.