CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0840300-00	Rice	cytosol, mitochondrion, nucleus	16.18	84.62
Zm00001d042920_P001	Maize	nucleus	66.47	69.75
TraesCS5A01G085000.1	Wheat	nucleus	44.71	47.8
TraesCS5D01G097400.1	Wheat	nucleus	45.0	47.52
TraesCS5B01G091000.1	Wheat	nucleus	44.41	47.04
HORVU5Hr1G022120.1	Barley	nucleus	37.65	46.38
TraesCS3B01G391100.1	Wheat	nucleus	33.82	38.46
HORVU3Hr1G086450.1	Barley	nucleus, plastid	30.29	37.59
TraesCS3A01G358100.1	Wheat	nucleus	32.94	37.21
TraesCS3D01G352600.1	Wheat	nucleus	31.18	37.19
TraesCS3D01G352500.1	Wheat	nucleus	32.35	36.91
TraesCS3A01G358200.1	Wheat	nucleus	30.88	36.46
TraesCS3B01G391200.1	Wheat	nucleus	29.12	34.14
TraesCS3D01G352700.1	Wheat	nucleus	28.82	33.68
HORVU3Hr1G086430.1	Barley	nucleus	27.35	32.86
TraesCS3A01G358400.1	Wheat	nucleus	27.94	32.76
OQU87881	Sorghum	nucleus	15.88	24.77
OQU82449	Sorghum	plastid	17.35	24.08
OQU77281	Sorghum	mitochondrion, nucleus	18.82	23.53
OQU82902	Sorghum	nucleus	17.06	22.31
OQU82514	Sorghum	nucleus	17.06	17.74
OQU90491	Sorghum	nucleus	11.76	15.38
EES01660	Sorghum	nucleus	11.18	13.67
KXG24798	Sorghum	nucleus	10.29	12.68
KXG39473	Sorghum	nucleus	10.88	11.78
OQU87296	Sorghum	plastid	14.71	9.38
KXG22537	Sorghum	plastid	12.94	8.87

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.6	EntrezGene:8085451	UniProt:A0A1W0W0B7	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	EnsemblPlants:OQU87830	ProteinID:OQU87830	ProteinID:OQU87830.1
PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF203	SMART:SM00389	EnsemblPlantsGene:SORBI_3003G350900
SUPFAM:SSF46689	UniParc:UPI0001A858EA	RefSeq:XP_002458739.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:-:67043349..67046708

Molecular Weight (calculated)

36258.5 Da

IEP (calculated)

8.919

GRAVY (calculated)

-0.629

Length

340 amino acids

Sequence
(BLAST)

001: MEMPPQQAAA AAANANANAN GAAHGQDEGG SSSPPLSPAS AALANARWNP TKEQVAVLEG LYEHGLRNPS AEQIQQITGR LREHGAIEGK NVFYWFQNHK
101: ARQRHRQKQD SFAYFTTLLR RPPPLPVLPM QPAPPYLHGR VPSPSPSPAP APTAIAMPPP PPPPSPAACN NNNNNNNNGG ARVMYRNAFY MPAPQAPPAN
201: AAYYYPPPQQ QVTVMYQYPR MELGQDKMMM TTAAAQQYPA VMFQQAGAAA TNGAGPAERV GPRRETLELF PLKPTFVLRR DKGRAGGGSA SALTSASTAT
301: ASASASEESE GLESGNCNGE EQEAPALPFY DFFGLQSGGR

Best Arabidopsis Sequence Match ( AT5G59340.1 )
(BLAST)

001: MENEVNAGTA SSSRWNPTKD QITLLENLYK EGIRTPSADQ IQQITGRLRA YGHIEGKNVF YWFQNHKARQ RQKQKQERMA YFNRLLHKTS RFFYPPPCSN
101: VGCVSPYYLQ QASDHHMNQH GSVYTNDLLH RNNVMIPSGG YEKRTVTQHQ KQLSDIRTTA ATRMPISPSS LRFDRFALRD NCYAGEDINV NSSGRKTLPL
201: FPLQPLNASN ADGMGSSSFA LGSDSPVDCS SDGAGREQPF IDFFSGGSTS TRFDSNGNGL

Arabidopsis Description

WOX2WUSCHEL-related homeobox 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6X7K1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.