Factsheet for VIT_17s0000g02460.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_01s0011g05020.t01	Wine grape	nucleus	52.03	55.25
CDY71075	Canola	nucleus	18.02	51.24
VIT_06s0004g03780.t01	Wine grape	nucleus	17.15	44.7
VIT_13s0019g03460.t01	Wine grape	nucleus	16.86	41.13
AT3G18010.1	Thale cress	nucleus	41.28	40.57
CDX75955	Canola	nucleus	40.99	40.29
Bra001694.1-P	Field mustard	nucleus	41.28	40.23
CDY51928	Canola	nucleus	41.28	40.23
CDY66658	Canola	nucleus	40.99	40.17
CDX92182	Canola	nucleus	40.7	39.89
Bra022267.1-P	Field mustard	nucleus	40.41	39.6
VIT_18s0001g10160.t01	Wine grape	nucleus	19.48	31.75
VIT_04s0023g03310.t01	Wine grape	nucleus	20.35	25.0
VIT_08s0056g01200.t01	Wine grape	nucleus	11.92	17.37
VIT_04s0044g00160.t01	Wine grape	nucleus	11.92	17.37
VIT_04s0044g00150.t01	Wine grape	nucleus	11.92	17.15
VIT_18s0122g01140.t01	Wine grape	nucleus	12.79	15.77
VIT_10s0003g00560.t01	Wine grape	nucleus	15.99	13.35

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100250993	wikigene:100250993	MapMan:15.5.3.6	EMBL:AM439847	ProteinID:CAN59842
ProteinID:CAN59842.1	ProteinID:CCB43276	ProteinID:CCB43276.1	UniProt:F6GSK3	EMBL:FN594950	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Homeobox-like_sf	InterPro:Homeobox_dom	InterPro:IPR001356	EntrezGene:LOC100250993	wikigene:LOC100250993
PFAM:PF00046	PFscan:PS50071	PANTHER:PTHR24326	PANTHER:PTHR24326:SF224	SMART:SM00389	SUPFAM:SSF46689
UniParc:UPI0002108F4E	ArrayExpress:VIT_17s0000g02460	EnsemblPlantsGene:VIT_17s0000g02460	EnsemblPlants:VIT_17s0000g02460.t01	RefSeq:XP_002278336	RefSeq:XP_002278336.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr17:+:2230435..2232793

Molecular Weight (calculated)

39039.6 Da

IEP (calculated)

7.691

GRAVY (calculated)

-0.870

Length

344 amino acids

Sequence
(BLAST)

001: MGYNDGGELN MPDSFNGRKL RPLIPRPATS TSGTATTTSS CLSRIHGTDL FGLNHHLEQS NIREFNTTPV IVSSRWNPTP EQLRTLEELY RRGTRTPSAE
101: QIQHITAQLR RYGKIEGKNV FYWFQNHKAR ERQKRRRQLE PDEQNRDVES TERKESGGSR TGFEEQTKNW ALSTNCSILA EESLSIQRAA KATAAAAECR
201: TDGWIQFDEG ELQHRRSLVE RNAIWQMMQL SCPSPTTHLI NTTTTTRTKE AAAVRRMDPK FIKTRDLNIF IAPYRSEGHN HLAGVGADHS NEEEGGESQT
301: LQLFPLRSGD GNENINEKEG EISVAAMNTN LTPHQFFEFL PLKN

Best Arabidopsis Sequence Match ( AT3G18010.1 )
(BLAST)

001: MWTMGYNEGG ADSFNGGRKL RPLIPRLTSC PTAAVNTNSD HRFNMAVVTM TAEQNKRELM MLNSEPQHPP VMVSSRWNPT PDQLRVLEEL YRQGTRTPSA
101: DHIQQITAQL RRYGKIEGKN VFYWFQNHKA RERQKRRRQM ETGHEETVLS TASLVSNHGF DKKDPPGYKV EQVKNWICSV GCDTQPEKPS RDYHLEEPAN
201: IRVEHNARCG GDERRSFLGI NTTWQMMQLP PSFYSSSHHH HQRNLILNSP TVSSNMSNSN NAVSASKDTV TVSPVFLRTR EATNTETCHR NGDDNKDQEQ
301: HEDCSNGELD HQEQTLELFP LRKEGFCSDG EKDKNISGIH CFYEFLPLKN

Arabidopsis Description

WOX1WUSCHEL-related homeobox 1 [Source:UniProtKB/Swiss-Prot;Acc:Q6X7K0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.