Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026791.1-P | Field mustard | nucleus | 87.59 | 98.07 |
| CDY33728 | Canola | nucleus | 78.62 | 82.91 |
| CDY70975 | Canola | nucleus | 24.83 | 43.37 |
| CDY41086 | Canola | nucleus | 31.38 | 34.08 |
| AT2G01500.1 | Thale cress | nucleus | 31.72 | 33.95 |
| CDY02582 | Canola | nucleus | 12.41 | 29.75 |
| CDY71075 | Canola | nucleus | 11.72 | 28.1 |
| CDY08539 | Canola | nucleus | 17.93 | 27.23 |
| CDY01007 | Canola | nucleus | 17.59 | 26.7 |
| CDX98862 | Canola | nucleus | 17.59 | 26.56 |
| CDX70130 | Canola | nucleus | 17.24 | 26.04 |
| CDY04966 | Canola | nucleus | 16.55 | 25.13 |
| CDY31716 | Canola | nucleus | 20.0 | 24.79 |
| CDY14103 | Canola | nucleus | 16.21 | 24.61 |
| CDX77191 | Canola | nucleus | 20.0 | 24.58 |
| CDX83299 | Canola | nucleus | 18.62 | 23.89 |
| CDX95764 | Canola | nucleus | 18.28 | 23.87 |
| CDY51928 | Canola | nucleus | 26.55 | 21.81 |
| CDY40847 | Canola | nucleus | 18.97 | 21.57 |
| CDX75955 | Canola | nucleus | 25.86 | 21.43 |
| CDY17046 | Canola | nucleus | 18.62 | 21.09 |
| CDY66658 | Canola | nucleus | 25.17 | 20.8 |
| CDX92182 | Canola | nucleus | 24.83 | 20.51 |
| CDY43848 | Canola | nucleus | 17.59 | 20.32 |
| CDY25659 | Canola | nucleus | 16.9 | 19.52 |
| CDY01358 | Canola | nucleus | 8.62 | 18.8 |
| CDY47803 | Canola | nucleus | 19.31 | 18.54 |
| CDY55370 | Canola | nucleus | 19.31 | 18.54 |
| CDY38144 | Canola | nucleus | 18.97 | 18.21 |
| CDY29212 | Canola | nucleus | 17.93 | 17.69 |
| CDY30337 | Canola | nucleus | 18.97 | 17.41 |
| CDY32648 | Canola | nucleus | 10.34 | 17.14 |
| CDY33030 | Canola | nucleus | 11.38 | 15.71 |
| CDX80277 | Canola | nucleus | 11.03 | 15.24 |
| CDY41648 | Canola | nucleus | 8.97 | 15.2 |
| CDY02885 | Canola | nucleus | 10.34 | 15.08 |
| CDX93197 | Canola | nucleus | 10.0 | 14.87 |
| CDY31870 | Canola | nucleus | 10.0 | 14.87 |
| CDY29511 | Canola | nucleus | 9.66 | 13.79 |
| CDY72488 | Canola | nucleus, plastid | 11.72 | 13.77 |
| CDX87744 | Canola | nucleus | 14.83 | 13.44 |
| CDY65899 | Canola | nucleus | 9.66 | 13.4 |
| CDY48780 | Canola | nucleus | 14.48 | 13.12 |
| CDX75511 | Canola | nucleus | 11.38 | 12.89 |
| CDY38461 | Canola | nucleus | 11.72 | 12.41 |
| CDY24814 | Canola | nucleus | 10.0 | 12.13 |
| CDY29949 | Canola | nucleus | 12.07 | 12.11 |
| CDY21173 | Canola | nucleus | 12.07 | 12.11 |
| CDX69148 | Canola | nucleus | 11.03 | 12.08 |
| CDY16883 | Canola | nucleus | 11.38 | 11.96 |
| CDX72546 | Canola | nucleus | 10.69 | 11.88 |
| CDY69228 | Canola | nucleus | 15.52 | 11.54 |
| CDY66087 | Canola | nucleus | 11.03 | 11.43 |
| CDY40623 | Canola | nucleus | 10.34 | 11.41 |
| CDX79549 | Canola | nucleus | 15.52 | 11.34 |
| CDY02686 | Canola | nucleus | 11.03 | 11.31 |
| CDY17211 | Canola | nucleus | 15.17 | 11.28 |
| CDY51756 | Canola | plastid | 12.41 | 11.04 |
| CDY50656 | Canola | nucleus | 12.41 | 10.62 |
| CDY29211 | Canola | mitochondrion | 4.48 | 8.72 |
Protein Annotations
| EnsemblPlants:CDX81686 | EnsemblPlantsGene:GSBRNA2T00136609001 | Gene3D:1.10.10.60 | GO:A0A078CWZ4 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | PANTHER:PTHR24326 |
| PANTHER:PTHR24326:SF509 | PFAM:PF00046 | PFscan:PS50071 | ProteinID:CDX81686 | ProteinID:CDX81686.1 | SEG:seg |
| SMART:SM00389 | SUPFAM:SSF46689 | UniParc:UPI0004EE9BFE | MapMan:15.5.3.6 | : | : |
Description
BnaC08g39150D
Coordinates
chrLK031826:+:366572..368075
Molecular Weight (calculated)
33990.3 Da
IEP (calculated)
6.296
GRAVY (calculated)
-1.216
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKQKLVSNI YISLGYNKDL TSHSLAHHCN MNDIRNDEQI ITGSAGEPKE REKYMHSRWN PTPEQTMVLE EVYSSGTRTP TTQQIQEIAS KLQKYGRIEG
101: KNVFYWFQNH KSRERLKRRR GDQQGVTTIS NVHEETLRKD NVIVDTANKD SSSVSRRRGD HRVIHTSTCL SPSPTHPQKN SIDDGKREEY KRGLEEEKET
201: TSQNQIHPSN TSDFNYHLIT ASKPSQEEEQ QYKLNDDEEE EEEETRKSRT LDLFPVIENQ EIIGFEEKNT KPNQLYCNYC YYYEFMPLMN
101: KNVFYWFQNH KSRERLKRRR GDQQGVTTIS NVHEETLRKD NVIVDTANKD SSSVSRRRGD HRVIHTSTCL SPSPTHPQKN SIDDGKREEY KRGLEEEKET
201: TSQNQIHPSN TSDFNYHLIT ASKPSQEEEQ QYKLNDDEEE EEEETRKSRT LDLFPVIENQ EIIGFEEKNT KPNQLYCNYC YYYEFMPLMN
001: MGYISNNNLI NYLPLSTTQP PLLLTHCDIN GNDHHQLITA SSGEHDIDER KNNIPAAATL RWNPTPEQIT TLEELYRSGT RTPTTEQIQQ IASKLRKYGR
101: IEGKNVFYWF QNHKARERLK RRRREGGAII KPHKDVKDSS SGGHRVDQTK LCPSFPHTNR PQPQHELDPA SYNKDNNANN EDHGTTEESD QRASEVGKYA
201: TWRNLVTWSI TQQPEEINID ENVNGEEEET RDNRTLNLFP VREYQEKTGR LIEKTKACNY CYYYEFMPLK N
101: IEGKNVFYWF QNHKARERLK RRRREGGAII KPHKDVKDSS SGGHRVDQTK LCPSFPHTNR PQPQHELDPA SYNKDNNANN EDHGTTEESD QRASEVGKYA
201: TWRNLVTWSI TQQPEEINID ENVNGEEEET RDNRTLNLFP VREYQEKTGR LIEKTKACNY CYYYEFMPLK N
Arabidopsis Description
WOX6WUSCHEL-related homeobox 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVF5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.