Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os04t0663600-01 | Rice | nucleus | 45.45 | 48.44 |
| Zm00001d037309_P001 | Maize | nucleus | 17.53 | 42.86 |
| OQU82514 | Sorghum | nucleus | 44.48 | 41.9 |
| Zm00001d001948_P001 | Maize | nucleus, plastid | 43.51 | 41.88 |
| Zm00001d026537_P001 | Maize | plastid | 41.88 | 39.69 |
| TraesCS3A01G368100.1 | Wheat | nucleus | 16.23 | 23.58 |
| TraesCS5A01G157300.1 | Wheat | nucleus | 17.53 | 22.41 |
| TraesCS1A01G052000.1 | Wheat | nucleus, plastid | 18.83 | 22.05 |
| TraesCS2A01G514000.1 | Wheat | plastid | 16.23 | 21.37 |
| TraesCS5A01G085000.1 | Wheat | nucleus | 18.51 | 17.92 |
| TraesCS2A01G100700.1 | Wheat | nucleus | 13.31 | 15.47 |
| TraesCS3A01G358100.1 | Wheat | nucleus | 14.94 | 15.28 |
| TraesCS3A01G358200.1 | Wheat | nucleus | 14.29 | 15.28 |
| TraesCS3A01G341700.1 | Wheat | nucleus | 12.34 | 14.34 |
| TraesCS3A01G073500.1 | Wheat | nucleus | 11.69 | 13.85 |
| TraesCS3A01G358400.1 | Wheat | nucleus | 12.99 | 13.79 |
| TraesCS4A01G130200.1 | Wheat | nucleus | 13.64 | 13.68 |
| TraesCS1A01G399400.1 | Wheat | nucleus | 14.29 | 9.05 |
| TraesCS3A01G247200.1 | Wheat | nucleus, plastid | 13.64 | 8.16 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G491900.1 | EnsemblPlantsGene:TraesCS2A01G491900 | Gene3D:1.10.10.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:Homeobox_dom | InterPro:IPR001356 | PANTHER:PTHR24326 | PANTHER:PTHR24326:SF123 |
| PFAM:PF00046 | PFscan:PS50071 | SEG:seg | SMART:SM00389 | SUPFAM:SSF46689 | TIGR:cd00086 |
| MapMan:15.5.3.6 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:724513437..724514647
Molecular Weight (calculated)
32799.2 Da
IEP (calculated)
8.471
GRAVY (calculated)
-0.529
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKQSVMWRQ LQHQHHQASG AAGGNAVAAA GAGATTTTAP VRPSGARWTP TPEQVKILKD LYYDCGIRSP TAEQIQRIAA RLRQYGRIEG KNVFYWFQNH
101: KARERQKKRL GVDVNGSPLA TATAADVLAL SPSGAAAGLY GAGSCAGRGA AVHPDASATT TTCWGDSTLQ DYMGARSTAG AGNHGGAAAA APTPWPAASF
201: PFSTNQTPPM PPPRELPLFP TGGGRQESAD DFNGSSYHLQ PNSSQWWEAA AASNANAMAV VHHQLLQEQH EQQHSFYNSS GNQQQMMMMM PIQDAGTSPE
301: LTLRAPYM
101: KARERQKKRL GVDVNGSPLA TATAADVLAL SPSGAAAGLY GAGSCAGRGA AVHPDASATT TTCWGDSTLQ DYMGARSTAG AGNHGGAAAA APTPWPAASF
201: PFSTNQTPPM PPPRELPLFP TGGGRQESAD DFNGSSYHLQ PNSSQWWEAA AASNANAMAV VHHQLLQEQH EQQHSFYNSS GNQQQMMMMM PIQDAGTSPE
301: LTLRAPYM
001: MEPPQHQHHH HQADQESGNN NNNKSGSGGY TCRQTSTRWT PTTEQIKILK ELYYNNAIRS PTADQIQKIT ARLRQFGKIE GKNVFYWFQN HKARERQKKR
101: FNGTNMTTPS SSPNSVMMAA NDHYHPLLHH HHGVPMQRPA NSVNVKLNQD HHLYHHNKPY PSFNNGNLNH ASSGTECGVV NASNGYMSSH VYGSMEQDCS
201: MNYNNVGGGW ANMDHHYSSA PYNFFDRAKP LFGLEGHQEE EECGGDAYLE HRRTLPLFPM HGEDHINGGS GAIWKYGQSE VRPCASLELR LN
101: FNGTNMTTPS SSPNSVMMAA NDHYHPLLHH HHGVPMQRPA NSVNVKLNQD HHLYHHNKPY PSFNNGNLNH ASSGTECGVV NASNGYMSSH VYGSMEQDCS
201: MNYNNVGGGW ANMDHHYSSA PYNFFDRAKP LFGLEGHQEE EECGGDAYLE HRRTLPLFPM HGEDHINGGS GAIWKYGQSE VRPCASLELR LN
Arabidopsis Description
WUSProtein WUSCHEL [Source:UniProtKB/Swiss-Prot;Acc:Q9SB92]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.