CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45569	Soybean	plastid	94.38	94.74
KRH74511	Soybean	plastid	83.52	80.51
CDY52512	Canola	mitochondrion	73.6	78.13
Solyc04g014270.2.1	Tomato	plastid	77.72	77.86
Bra010637.1-P	Field mustard	mitochondrion, plastid	73.22	77.73
Solyc11g010450.1.1	Tomato	plastid	76.97	77.26
PGSC0003DMT400060752	Potato	cytosol, plastid	77.34	76.91
AT2G22480.1	Thale cress	plastid	77.34	76.91
PGSC0003DMT400041788	Potato	cytosol, plastid	76.4	76.69
CDX90382	Canola	plastid	73.41	76.56
GSMUA_Achr1P12300_001	Banana	cytosol	61.42	75.93
CDY13756	Canola	plastid	76.59	75.88
CDX76918	Canola	plastid	76.59	75.88
VIT_00s0199g00240.t01	Wine grape	cytosol	65.54	74.31
Bra038519.1-P	Field mustard	plastid	76.97	73.79
GSMUA_Achr7P11550_001	Banana	mitochondrion	69.29	73.12
GSMUA_Achr1P21680_001	Banana	cytosol	65.73	72.97
VIT_00s0199g00220.t01	Wine grape	plastid	70.97	72.61
HORVU5Hr1G024340.24	Barley	mitochondrion	61.61	70.45
Zm00001d032172_P002	Maize	plastid	68.16	69.07
Bra030394.1-P	Field mustard	cytosol, plastid	51.69	68.49
TraesCS5D01G104900.1	Wheat	plastid	67.23	68.25
TraesCS5A01G092600.1	Wheat	plastid	67.23	68.25
EER98900	Sorghum	plastid	67.6	68.24
Os09t0415800-01	Rice	plastid	67.23	68.12
TraesCS5B01G098700.1	Wheat	plastid	65.92	67.95
EER91637	Sorghum	cytosol, plastid	66.67	67.94
TraesCS5B01G225200.2	Wheat	plastid	67.42	67.92
TraesCS5A01G226600.2	Wheat	plastid	67.23	67.74
TraesCS5D01G234000.1	Wheat	plastid	66.85	67.49
HORVU5Hr1G065650.11	Barley	plastid	67.42	67.16
Zm00001d033002_P001	Maize	extracellular	65.92	67.05
Os10t0405600-01	Rice	plastid	65.73	66.98
TraesCS7D01G083200.1	Wheat	plastid	65.92	66.54
TraesCS7A01G088100.1	Wheat	plastid	65.54	66.16
TraesCS4A01G387000.2	Wheat	plastid	66.1	65.98
KXG25278	Sorghum	plastid	67.79	64.87
Zm00001d005756_P002	Maize	plastid	67.42	63.49
KRH69652	Soybean	plastid	47.75	62.81
HORVU7Hr1G019810.6	Barley	mitochondrion, plastid	32.96	52.07
Os08t0439000-01	Rice	cytosol	24.16	46.74
KRH41464	Soybean	cytosol	40.45	45.67
KRH23377	Soybean	cytosol	41.01	45.53
KRH60181	Soybean	cytosol, nucleus	39.89	45.22
KRH44258	Soybean	cytosol	38.58	44.98
KRH47193	Soybean	cytosol	38.58	44.4
KRH51223	Soybean	endoplasmic reticulum, nucleus	37.45	43.57
KRH62114	Soybean	endoplasmic reticulum	41.01	43.03
KRH34610	Soybean	plastid	41.39	42.34
KRH09958	Soybean	nucleus	40.82	41.76
KRH74196	Soybean	endoplasmic reticulum	41.57	41.19
KRH49011	Soybean	endoplasmic reticulum	41.01	40.86
KRH52812	Soybean	endoplasmic reticulum	41.01	40.18
KRG92178	Soybean	cytosol, plastid	19.29	31.02
KRH55292	Soybean	extracellular	3.93	25.3

Protein Annotations

KEGG:00010+2.7.1.11	KEGG:00030+2.7.1.11	KEGG:00051+2.7.1.11	KEGG:00052+2.7.1.11	KEGG:00680+2.7.1.11	EntrezGene:100793883
MapMan:3.12.1	Gene3D:3.40.50.450	EMBL:ACUP02011064	InterPro:ATP_PFK	EnsemblPlantsGene:GLYMA_18G145500	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003872	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005975	GO:GO:0006002	GO:GO:0006091
GO:GO:0006096	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009058
GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740	GO:GO:0046872	GO:GO:0061615
UniProt:I1N1M0	EnsemblPlants:KRG99447	ProteinID:KRG99447	ProteinID:KRG99447.1	HAMAP:MF_01981	PFAM:PF00365
PIRSF:PIRSF000534	InterPro:PKF_sf	PRINTS:PR00476	PANTHER:PTHR13697	PANTHER:PTHR13697:SF35	MetaCyc:PWY-1042
MetaCyc:PWY-1861	MetaCyc:PWY-5484	MetaCyc:PWY-7385	InterPro:Phosphofructokinase_dom	InterPro:PyroP-dep_PFK_TP0108	SUPFAM:SSF53784
UniParc:UPI000233E9C5	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:24254769..24263233

Molecular Weight (calculated)

58421.1 Da

IEP (calculated)

7.638

GRAVY (calculated)

-0.081

Length

534 amino acids

Sequence
(BLAST)

001: MGSISHVITT TLPHLPSTRS LGFPISHSNS RLLSLPPTRV AKKVGVFAEH SSRSSTASAA SVDFSDPDWK IKFQEDWEAR FRLPHLTDIF PNAPPIPSTF
101: CLKMRTPIDR DFPGHYSLDE EWHGYINNND RVLLKTIYYS SPTSAGAECI DPDCTWVEQW VHRAGPREKI YYKPEEVKAA IVTCGGLCPG LNDVIRQIVI
201: TLEIYGVKNI VGIPFGYRGF SDKELTEVPL SRKVVQNIHL SGGSLLGVSR GGPGVSDIVD SLEKRGINML FVLGGNGTHA GANAIHHECR KRRLKVSVIG
301: VPKTIDNDIL LMDKTFGFDT AVEEAQRAIN SAYIEAHSAY HGIGVVKLMG RSSGFIAMQA SLSSGQVDIC LIPEVPFNLH GPHGVLSHLK YLLETKGSAV
401: VCVAEGAGQN LLQKTNATDA SGNVVFGDIG VYIQQETKKY FKEIGVHADV KYIDPTYMIR AIRANASDGI LCTVLGQNAV HGAFAGYSGI TVGLCNTHYV
501: YFPIPEVISH PRLVDPNSRM WHRCLTSTGQ PDFI

Best Arabidopsis Sequence Match ( AT2G22480.1 )
(BLAST)

001: MDALSQAISS GISVPYKNNS SSLVPSHGLT SLILRKSRSP VNPSSRSRVS VRASEIQHSK TSASSIDLSD PDWKLKYEKD FEQRFSIPHI TDVLPDAEAI
101: RSTFCLKMRS PTEDFVGGYP SDEEWHGYIN NNDRVLLKVI SYSSPTSAGA ECLDHDCSWV EQWIHRAGPR EKIYFRPEEV KAAIITCGGL CPGLNDVIRH
201: IVITLEIYGV KNIVGIPFGY RGFSDKDLTE MPLSRKVVQN IHLSGGSLLG VSRGGPSVSE IVDSMEERGI NMLFVLGGNG THAGANAIHN ECRKRKIKVA
301: VVGVPKTIDN DILHMDKTFG FDTAVEEAQR AINSAYIEAH SAYHGIGVVK LMGRNSGFIA MQASLASGQV DICLIPEVPF NLHGPNGVLK HLKYLIETKG
401: SAVICVAEGA GQNFLEKTNA KDASGNAVLG DFGVYIQQET KKYFKEISTP IDVKYIDPTY MIRAVRANAS DGILCTVLGQ NAVHGAFAGY SGITVGIINT
501: HYAYLPITEV IAYPKSVDPN SRMWHRCLTS TGQPDFI

Arabidopsis Description

PFK5ATP-dependent 6-phosphofructokinase 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VYN6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.