CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57228	Soybean	cytosol	97.45	97.3
VIT_17s0000g01450.t01	Wine grape	cytosol	65.32	66.21
AT5G50380.1	Thale cress	nucleus	61.26	59.74
CDX71629	Canola	cytosol	58.86	58.68
CDY05812	Canola	cytosol, plastid	59.01	58.66
Bra014060.1-P	Field mustard	plastid	58.86	58.51
Solyc03g111320.1.1	Tomato	cytosol	57.66	57.74
PGSC0003DMT400090181	Potato	cytosol	57.51	57.42
TraesCS7B01G035500.1	Wheat	cytosol	38.29	54.49
GSMUA_Achr6P20710_001	Banana	cytosol, plastid	51.65	52.6
GSMUA_Achr9P01500_001	Banana	cytosol	47.6	52.57
HORVU2Hr1G069050.1	Barley	cytosol	38.89	49.81
HORVU7Hr1G028060.3	Barley	cytosol	48.65	48.72
TraesCS7A01G134400.1	Wheat	cytosol	48.95	48.37
GSMUA_Achr10P...	Banana	cytosol	46.7	48.37
TraesCS7D01G133800.1	Wheat	cytosol	48.65	48.07
TraesCS1D01G029000.1	Wheat	cytosol	38.44	47.67
Os02t0505400-02	Rice	plasma membrane	48.95	47.31
TraesCS3D01G424900.1	Wheat	cytosol	46.7	46.84
TraesCS3A01G429600.1	Wheat	cytosol	46.7	46.84
EES05115	Sorghum	cytosol	47.9	46.77
TraesCS2A01G281600.1	Wheat	cytosol	47.6	46.76
Zm00001d000403_P001	Maize	extracellular	47.6	46.69
Os04t0382200-01	Rice	cytosol	48.2	46.66
TraesCS3B01G467500.1	Wheat	cytosol	46.7	46.63
EES01976	Sorghum	cytosol	45.95	46.5
KXG26069	Sorghum	cytosol	48.8	46.43
TraesCS2B01G298900.1	Wheat	cytosol	47.45	46.33
TraesCS2D01G280500.1	Wheat	nucleus	47.45	46.27
HORVU3Hr1G094570.3	Barley	cytosol	46.4	46.05
Zm00001d025206_P001	Maize	cytosol	47.6	45.16
Zm00001d042331_P001	Maize	cytosol, plastid	38.44	44.91
Zm00001d012020_P001	Maize	cytosol	44.29	43.9
TraesCS7A01G259600.1	Wheat	cytosol, nucleus, plastid	37.24	42.69
HORVU7Hr1G054020.2	Barley	plasma membrane	37.54	42.59
TraesCS7D01G260600.1	Wheat	cytosol	37.54	41.81
TraesCS7B01G157600.1	Wheat	cytosol, nucleus, plastid	37.84	41.72
EES15315	Sorghum	cytosol	37.39	41.57
Os08t0530300-01	Rice	plasma membrane	37.09	40.76
Zm00001d031614_P001	Maize	cytosol	36.64	40.6
KRH47637	Soybean	endoplasmic reticulum	37.39	39.78
KRH45035	Soybean	cytosol	39.04	38.18
KRH01279	Soybean	cytosol	38.89	38.09
KRH06215	Soybean	cytosol	36.79	36.73
KRH63230	Soybean	cytosol	33.93	35.87
KRH17115	Soybean	cytosol	34.68	35.87
KRH72760	Soybean	cytosol	33.93	35.31
KRH54704	Soybean	cytosol	33.18	35.02
KRH18527	Soybean	cytosol	25.38	34.92
KRH36360	Soybean	cytosol	28.68	31.57
KRH34637	Soybean	cytosol	30.33	31.51
KRG92152	Soybean	cytosol	30.18	31.02
KRG88728	Soybean	cytosol	30.33	30.98
KRG90170	Soybean	cytosol	17.12	30.56
KRH29876	Soybean	mitochondrion	27.93	30.54
KRH25009	Soybean	mitochondrion	27.93	30.29
KRH22987	Soybean	cytosol, mitochondrion, plastid	25.83	30.02
KRH22988	Soybean	plastid	21.47	29.73
KRH70050	Soybean	nucleus	31.23	29.34
KRH10327	Soybean	plastid	25.83	29.01
KRG95862	Soybean	plastid	26.88	28.96
KRH06895	Soybean	cytosol	30.63	28.61
KRH67580	Soybean	plastid	27.18	28.5
KRG94595	Soybean	nucleus	30.18	28.27
KRH32349	Soybean	plastid	24.77	26.53
KRG93132	Soybean	cytosol	18.47	26.17
KRH19755	Soybean	mitochondrion, plastid	19.97	25.24

Protein Annotations

EntrezGene:100818693	MapMan:22.6.3.1	EMBL:ACUP02010369	ncoils:Coil	InterPro:Cullin_repeat-like_dom_sf	InterPro:Exo70
EnsemblPlantsGene:GLYMA_17G129700	GO:GO:0000145	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006887	GO:GO:0008150	GO:GO:0009987	UniProt:I1MUP7	EnsemblPlants:KRH03960
ProteinID:KRH03960	ProteinID:KRH03960.1	PFAM:PF03081	PANTHER:PTHR12542	PANTHER:PTHR12542:SF19	SUPFAM:SSF74788
UniParc:UPI000233E67C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:10388359..10391222

Molecular Weight (calculated)

74865.1 Da

IEP (calculated)

4.716

GRAVY (calculated)

-0.313

Length

666 amino acids

Sequence
(BLAST)

001: MATTTSLGGG AGGDDRVLAT AQQIVKSLRA AKEDREDMLM IFSAFDNRLS GISDLINGDD SKSSDEEELD RFEAAEKVIL ADASHSGEPS RQSTSLFNPP
101: NNPAEYFSAV DEIIHWMEQF SIAPPPSSAA GRTIQVIADR AENAIQLAMS RLEEELRHVL ICNTIPLDAV SRYGSIRRVS LSFGSHDGAA AIDDSPLQSF
201: GEVDSSRFHD RAASLGDDLF VDLVRPEAVQ DLREIIDRMV RSGYERECLQ VYSSVRRDAL DECLVILGVE RLSIEEVQKV EWRSLDEKMK NWVQAVKVVV
301: GVLLSGEKRL CDGLFGDLDD LKEICFNETA KGCVMQLLNF GEAIAICKRS PEKLFRILDM YEALRDAMPD LQAMVSDEFV IGEANGVLSG LGEAAKGTFA
401: EFENCIRNET SKKPVITGDV HPLPRYVMNY LKLLVDYGDP MDSLLELSEE DLYRFKNDLG GDGSQLEAMS PLGQRILLLM SELEYNLEEK SKLYEDSAMQ
501: QVFLMNNLYY LVRKVKDSDL GKVLGDNWIR KRRGQIRQYA TGYLRASWSR ALSCLKDEGI GGSSNNASKM ALKERFKSFN ACFEEIYRVQ TAWKVPDDQL
601: REELRISISE KVIPAYRSFV GRFRCQLEGR HVGKYIKYTP EDLETYLLDL FEGSPAVLHH IRRKST

Best Arabidopsis Sequence Match ( AT5G50380.1 )
(BLAST)

001: MAATTTTAAS INAEAGGGGG GAEDRVLATA QQIMKSLNTP KEVREDMLLI FSSFDNRLSN IKTAMTNQEE NQNDALVARL EAAESVIHRW DGGNDSSRHS
101: SSSSGNYRSS SFSLSFDESP EEATEFLSAV DEIISLLEDL SSENKPDMVD RADSALQMAM SQLEDEFRRI LIRNTVPLDA ERLYGSMRRV SLSFADGDVV
201: EDFENFGLVA DGDGSGSRRR LFHERGGSIG CDLWVDLINP TAVEDLKEIA ERMIRAGYEK ECVQVYSSVR RDALDDCLMI LGVEKLSIEE VQKIDWKSMD
301: EKMKKWIQAV KITVRVLLVG EKKICDEIFS SSESSKEVCF NETTKSCVMQ LLNFGEAVAI GRRSSEKLFR ILDMYDALAN VLQTLEVMVT DCFVCNETKG
401: VLEALGDAAR GTFVEFENNV RNETSKRPTT NGEVHPMIRY VMNYMKLIVD YAVTLNSLLE SNESSGVSGD DSTEEMSPLA KRILGLITSL ESNLEDKSKL
501: YEDGGLQHVF MMNNIYYIVQ KVKDSELGKL LGDDWVRKRR GQIRQYATGY LRASWSRVLS ALRDESMGGS SSGSPSYGQR SNNSSKMALK ERFRGFNASF
601: EELYRLQTAW KVPDPQLREE LRISISEKVI PAYRAFFGRN RSQLEGGRHA GKYIKYTPDD LESYLPDLFE GNQLVIHHPR RKS

Arabidopsis Description

ATEXO70F1Exocyst subunit exo70 family protein F1 [Source:UniProtKB/TrEMBL;Acc:F4K8Y6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.