CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 3
peroxisome 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32676	Soybean	endoplasmic reticulum, extracellular, nucleus	98.61	98.61
VIT_08s0007g03610.t01	Wine grape	extracellular	85.68	85.48
Solyc09g009390.2.1	Tomato	extracellular	82.45	82.45
PGSC0003DMT400007000	Potato	cytosol	81.52	81.52
GSMUA_Achr2P20300_001	Banana	extracellular	80.37	80.18
Os09t0567300-01	Rice	plasma membrane	78.75	78.39
KXG35115	Sorghum	peroxisome	78.29	77.93
GSMUA_Achr1P17030_001	Banana	cytosol, mitochondrion, peroxisome	78.06	77.88
TraesCS4B01G010500.1	Wheat	golgi	77.83	77.47
Zm00001d005347_P001	Maize	peroxisome, plasma membrane	77.6	77.24
TraesCS4D01G009200.1	Wheat	golgi	77.6	77.24
TraesCS4A01G303300.1	Wheat	golgi	77.6	77.24
EES15190	Sorghum	golgi	77.14	77.14
Zm00001d049954_P001	Maize	extracellular	76.91	76.91
TraesCS7A01G277600.1	Wheat	peroxisome	77.14	76.78
TraesCS7D01G277500.1	Wheat	peroxisome	77.14	76.78
Os08t0557600-01	Rice	plasma membrane	76.67	76.32
AT5G03630.1	Thale cress	peroxisome	74.6	74.25
TraesCS7B01G175300.1	Wheat	cytosol	77.14	73.89
CDY11263	Canola	peroxisome	73.44	73.1
CDX80881	Canola	peroxisome	72.98	72.64
Bra005775.1-P	Field mustard	cytosol	72.52	72.18
AT3G09940.1	Thale cress	cytosol	65.59	64.4
CDY07945	Canola	peroxisome	60.51	59.01
Bra001293.1-P	Field mustard	cytosol	53.81	58.99
CDX74001	Canola	cytosol	53.58	58.88
KRH07189	Soybean	plasma membrane	53.81	48.74
KRG94085	Soybean	peroxisome	53.58	48.54
KRH59968	Soybean	plastid	39.03	40.05
KRH41238	Soybean	nucleus	43.88	38.93

Protein Annotations

MapMan:10.4.1.2	EntrezGene:100500084	Gene3D:3.30.390.30	Gene3D:3.50.50.60	UniProt:A0A0R0HR30	EMBL:ACUP02007081
InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	EnsemblPlantsGene:GLYMA_11G209100	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0050660
GO:GO:0055114	InterPro:IPR016156	InterPro:IPR036188	EnsemblPlants:KRH30834	ProteinID:KRH30834	ProteinID:KRH30834.1
PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00411	PANTHER:PTHR43557	PANTHER:PTHR43557:SF5	SUPFAM:SSF51905
SUPFAM:SSF55424	UniParc:UPI0001D62E96	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:30057154..30061089

Molecular Weight (calculated)

47042.3 Da

IEP (calculated)

5.274

GRAVY (calculated)

-0.097

Length

433 amino acids

Sequence
(BLAST)

001: MAKTFKYIIL GGGVSAGYAA REFAKQGVKP GELAIISKEA VAPYERPALS KAYLFPESPA RLPGFHVCVG SGGERLLPEW YTEKGIELIL STEIVKVDLA
101: AKSLISAGGE TFSYQILIVA TGSTVIRLTD FGVEGADAKN IFYLREVDDA DKLYEAIKAK KNGKAVVVGG GYIGLELSAV LKLNNIDVTM VYPEPWCMPR
201: LFTAGIAEFY EEYYKNKGVN IIKGTVAVGF TSNSDGEVKE VKLKDGRVLE ADIVVVGVGG RPQTALVKGQ VEEEKGGIKT DAFFKTNLSD VYAVGDVATF
301: PLKLYGELRR VEHVDHSRKS AEQAVKAIKA AEEGRTVEEY DYLPYFYSRS FDLSWQFYGD NVGDTVLFGD NNPASSKPKF GTYWIKDGKV VGVFLEGGTP
401: EENQAIAKVA KVQPPVADVD QLAKEGLSFA SKI

Best Arabidopsis Sequence Match ( AT3G52880.1 )
(BLAST)

001: MAEKSFKYII LGGGVSAGYA AKEFANQGVQ PGELAVISKE AVAPYERPAL SKGYLFPEGA ARLPGFHCCV GSGGEKLLPE SYKQKGIELI LSTEIVKADL
101: SAKSLVSATG DVFKYQTLII ATGSTVLRLT DFGVKGADSK NILYLREIDD ADKLVEAIKA KKGGKAVVVG GGYIGLELSA VLRINNLDVT MVFPEPWCMP
201: RLFTADIAAF YETYYTNKGV KIIKGTVASG FTAQPNGEVK EVQLKDGRTL EADIVIVGVG AKPLTSLFKG QVEEDKGGIK TDAFFKTSVP DVYAVGDVAT
301: FPLKMYGDVR RVEHVDHSRK SAEQAVKAIK AAEGGAAVEE YDYLPFFYSR SFDLSWQFYG DNVGDSVLFG DSNPSNPKPR FGAYWVQGGK VVGAFMEGGS
401: GDENKALAKV AKARPSAESL DELVKQGISF AAKI

Arabidopsis Description

ATMDAR1Monodehydroascorbate reductase 1 [Source:UniProtKB/TrEMBL;Acc:F4J849]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.