Factsheet for Solyc09g009390.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 3
peroxisome 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
extracellular: 22892874
plastid: 22908117
unclear: 26455813
extracellular: 26583031
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 22892874 doi

EH Konozy, H Rogniaux, M Causse, M Faurobert

Unité de Génétique et Amélioration des Fruits et Légumes, INRA, BP 94, 84143 Montfavet, France. ehkonozy@yahoo.com

msms PMID: 26583031 doi

F Gawehns, L Ma, O Bruning, PM Houterman, S Boeren, BJ Cornelissen, M Rep, FL Takken

Laboratory of Biochemistry, Wageningen University Wageningen, Netherlands., Molecular Plant Pathology, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands., RNA Biology and Applied Bioinformatics Research Group and MAD: Dutch Genomics Service and Support Provider, Faculty of Science, Swammerdam Institute for Life Sciences, University of Amsterdam Amsterdam, Netherlands.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400007000	Potato	cytosol	99.08	99.08
VIT_08s0007g03610.t01	Wine grape	extracellular	84.76	84.56
KRH30834	Soybean	nucleus	82.45	82.45
KRH32676	Soybean	endoplasmic reticulum, extracellular, nucleus	82.22	82.22
GSMUA_Achr2P20300_001	Banana	extracellular	80.6	80.41
GSMUA_Achr1P17030_001	Banana	cytosol, mitochondrion, peroxisome	79.91	79.72
CDX73597	Canola	peroxisome	79.68	79.49
CDX78130	Canola	peroxisome	79.68	79.49
CDY13340	Canola	peroxisome	79.68	79.49
Bra006954.1-P	Field mustard	peroxisome	79.45	79.26
Os09t0567300-01	Rice	plasma membrane	79.21	78.85
KXG35115	Sorghum	peroxisome	78.98	78.62
Zm00001d005347_P001	Maize	peroxisome, plasma membrane	78.52	78.16
TraesCS4B01G010500.1	Wheat	golgi	78.06	77.7
TraesCS4D01G009200.1	Wheat	golgi	78.06	77.7
TraesCS4A01G303300.1	Wheat	golgi	77.83	77.47
Os08t0557600-01	Rice	plasma membrane	76.67	76.32
EES15190	Sorghum	golgi	76.21	76.21
Zm00001d049954_P001	Maize	extracellular	76.21	76.21
TraesCS7D01G277500.1	Wheat	peroxisome	76.21	75.86
TraesCS7A01G277600.1	Wheat	peroxisome	75.98	75.63
AT3G52880.2	Thale cress	extracellular, vacuole	79.68	74.03
TraesCS7B01G175300.1	Wheat	cytosol	75.98	72.79
Solyc02g086710.2.1	Tomato	plastid	52.42	47.19
Solyc08g081530.2.1	Tomato	plastid	43.88	39.42

Protein Annotations

MapMan:10.4.1.2	Gene3D:3.30.390.30	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575	GO:GO:0005576
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005777	GO:GO:0005782	GO:GO:0005886
GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0016020	GO:GO:0016491
GO:GO:0016656	GO:GO:0046686	GO:GO:0048046	GO:GO:0050660	GO:GO:0055114	InterPro:IPR016156
InterPro:IPR036188	UniProt:K4CQW8	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00411	PANTHER:PTHR43557
PANTHER:PTHR43557:SF5	SUPFAM:SSF51905	SUPFAM:SSF55424	EnsemblPlantsGene:Solyc09g009390.2	EnsemblPlants:Solyc09g009390.2.1	UniParc:UPI000276C4DF
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:+:2835367..2840425

Molecular Weight (calculated)

47024.1 Da

IEP (calculated)

5.825

GRAVY (calculated)

-0.110

Length

433 amino acids

Sequence
(BLAST)

001: MAEKSFKYVI VGGGVSAGYA AREFAKQGVK PGELAIISKE AVAPYERPAL SKAYLFPEGA ARLPGFHVCV GSGGERQLPE WYAEKGISLI LSTEIVKADL
101: ASKTLVSAAG ESFKYQTLVI ATGSTVLKLS DFGVQGADSK NIFYLREIDD ADQLVEALKA KKNGKAVVVG GGYIGLELSA VLRLNNIEVN MVYPEPWCMP
201: RLFTEGIAAF YEGYYKNKGV NIIKGTVAVG FDTHPNGEVK EVKLKDGRVL EADIVVVGVG ARPLTTLFKG QVEEEKGGIK TDAFFKTSVP DVYAVGDVAT
301: FPLKMYNEIR RVEHVDHSRK SAEQAVKAIF ASEQGKSVDE YDYLPYFYSR AFDLSWQFYG DNVGETVLFG DADPNSATHK FGQYWIKDGK IVGAFLESGS
401: PEENKAIAKV AKVQPPATLD QLAQEGISFA SKI

Best Arabidopsis Sequence Match ( AT3G52880.1 )
(BLAST)

001: MAEKSFKYII LGGGVSAGYA AKEFANQGVQ PGELAVISKE AVAPYERPAL SKGYLFPEGA ARLPGFHCCV GSGGEKLLPE SYKQKGIELI LSTEIVKADL
101: SAKSLVSATG DVFKYQTLII ATGSTVLRLT DFGVKGADSK NILYLREIDD ADKLVEAIKA KKGGKAVVVG GGYIGLELSA VLRINNLDVT MVFPEPWCMP
201: RLFTADIAAF YETYYTNKGV KIIKGTVASG FTAQPNGEVK EVQLKDGRTL EADIVIVGVG AKPLTSLFKG QVEEDKGGIK TDAFFKTSVP DVYAVGDVAT
301: FPLKMYGDVR RVEHVDHSRK SAEQAVKAIK AAEGGAAVEE YDYLPFFYSR SFDLSWQFYG DNVGDSVLFG DSNPSNPKPR FGAYWVQGGK VVGAFMEGGS
401: GDENKALAKV AKARPSAESL DELVKQGISF AAKI

Arabidopsis Description

ATMDAR1Monodehydroascorbate reductase 1 [Source:UniProtKB/TrEMBL;Acc:F4J849]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.