Factsheet for TraesCS4D01G009200.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

peroxisome 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	mitochondrion

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G010500.1	Wheat	golgi	98.16	98.16
TraesCS4A01G303300.1	Wheat	golgi	97.93	97.93
Os09t0567300-01	Rice	plasma membrane	88.28	88.28
KXG35115	Sorghum	peroxisome	87.13	87.13
Zm00001d005347_P001	Maize	peroxisome, plasma membrane	86.67	86.67
TraesCS7D01G277500.1	Wheat	peroxisome	81.15	81.15
GSMUA_Achr1P17030_001	Banana	cytosol, mitochondrion, peroxisome	80.69	80.88
GSMUA_Achr2P20300_001	Banana	extracellular	78.62	78.8
VIT_08s0007g03610.t01	Wine grape	extracellular	78.16	78.34
Solyc09g009390.2.1	Tomato	extracellular	77.7	78.06
PGSC0003DMT400007000	Potato	cytosol	77.24	77.6
KRH30834	Soybean	nucleus	77.24	77.6
KRH32676	Soybean	endoplasmic reticulum, extracellular, nucleus	77.24	77.6
CDX78130	Canola	peroxisome	76.09	76.27
Bra006954.1-P	Field mustard	peroxisome	75.86	76.04
CDX73597	Canola	peroxisome	75.86	76.04
CDY13340	Canola	peroxisome	75.63	75.81
AT3G52880.2	Thale cress	extracellular, vacuole	76.32	71.24
AT5G03630.1	Thale cress	peroxisome	70.57	70.57
CDX80881	Canola	peroxisome	69.2	69.2
CDY11263	Canola	peroxisome	68.97	68.97
Bra005775.1-P	Field mustard	cytosol	68.51	68.51
AT3G09940.1	Thale cress	cytosol	62.99	62.13
Bra001293.1-P	Field mustard	cytosol	50.8	55.95
CDX74001	Canola	cytosol	50.57	55.84
CDY07945	Canola	peroxisome	56.78	55.63
TraesCS6D01G254000.1	Wheat	extracellular	53.33	48.74
TraesCS6D01G253900.2	Wheat	extracellular, mitochondrion	51.95	43.88
TraesCS7D01G299500.1	Wheat	mitochondrion	43.68	37.7

Protein Annotations

MapMan:10.4.1.2	Gene3D:3.30.390.30	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016491	GO:GO:0016656	GO:GO:0050660	GO:GO:0055114	GO:GO:0098869
InterPro:IPR016156	InterPro:IPR036188	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00411	PANTHER:PTHR43557
PANTHER:PTHR43557:SF3	SUPFAM:SSF51905	SUPFAM:SSF55424	EnsemblPlantsGene:TraesCS4D01G009200	EnsemblPlants:TraesCS4D01G009200.1	SEG:seg

Description

No Description!

Coordinates

chr4D:-:4358188..4361741

Molecular Weight (calculated)

46366.1 Da

IEP (calculated)

4.989

GRAVY (calculated)

-0.063

Length

435 amino acids

Sequence
(BLAST)

001: MASGKHFKYI VLGGGVSGGY AAREFAKQGV QPGELAIISK EAVAPYERPA LSKAYLFPQN PARLPGFHVC VGSGGERLLP EWYSEKGIEL ILSTEIVKAD
101: LASKTLTSAA GATFTYDTLL IATGSSVIKL SDFGTQGADS NNILYLREID DADNLYAAIQ AKKGGKAVVV GGGYIGLELS AVLKMNDLDV TMVFPEPWCM
201: PRLFTAEIAA FYESYYTNKG VKILKGTIAV GFDADANGDV TAVKLKDGSV LDADIVVVGV GGRPLTNLFK GQVAEEKGGI KTDAFFETSV PGVYAVGDVA
301: TFPMKIYNDE RRVEHVDHSR KSAEQAVKAI KGKEAGSAVE EYDYLPYFYS RSFDLSWQFY GDNVGDAILF GDTDPGSAKP KFGSYWVKDG KCVGAFLEGG
401: SPDENAAIAK LARAQPPAAS PDELKAAGLQ FASKI

Best Arabidopsis Sequence Match ( AT3G52880.1 )
(BLAST)

001: MAEKSFKYII LGGGVSAGYA AKEFANQGVQ PGELAVISKE AVAPYERPAL SKGYLFPEGA ARLPGFHCCV GSGGEKLLPE SYKQKGIELI LSTEIVKADL
101: SAKSLVSATG DVFKYQTLII ATGSTVLRLT DFGVKGADSK NILYLREIDD ADKLVEAIKA KKGGKAVVVG GGYIGLELSA VLRINNLDVT MVFPEPWCMP
201: RLFTADIAAF YETYYTNKGV KIIKGTVASG FTAQPNGEVK EVQLKDGRTL EADIVIVGVG AKPLTSLFKG QVEEDKGGIK TDAFFKTSVP DVYAVGDVAT
301: FPLKMYGDVR RVEHVDHSRK SAEQAVKAIK AAEGGAAVEE YDYLPFFYSR SFDLSWQFYG DNVGDSVLFG DSNPSNPKPR FGAYWVQGGK VVGAFMEGGS
401: GDENKALAKV AKARPSAESL DELVKQGISF AAKI

Arabidopsis Description

ATMDAR1Monodehydroascorbate reductase 1 [Source:UniProtKB/TrEMBL;Acc:F4J849]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.