Factsheet for TraesCS6D01G254000.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, peroxisome, plastid, secretory
iPSORT:	secretory
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G273400.1	Wheat	extracellular	98.32	98.32
TraesCS6B01G301300.1	Wheat	extracellular	98.74	88.51
EES05650	Sorghum	plasma membrane	86.34	86.34
Os02t0707100-01	Rice	plasma membrane	85.71	85.71
Zm00001d017787_P001	Maize	extracellular	85.71	85.36
GSMUA_Achr6P09110_001	Banana	extracellular	74.58	75.21
VIT_14s0066g01100.t01	Wine grape	plasma membrane, vacuole	73.95	73.64
CDX86468	Canola	extracellular	70.17	71.98
Solyc02g086710.2.1	Tomato	plastid	72.27	71.52
PGSC0003DMT400001279	Potato	plasma membrane	72.06	71.31
KRH07189	Soybean	plasma membrane	70.8	70.5
CDY44437	Canola	vacuole	70.17	70.32
KRG94085	Soybean	peroxisome	70.59	70.29
CDY49764	Canola	plasma membrane, vacuole	67.86	69.76
Bra025303.1-P	Field mustard	extracellular	70.59	68.99
AT3G27820.1	Thale cress	vacuole	70.17	68.44
Bra033028.1-P	Field mustard	plasma membrane, vacuole	68.49	66.53
TraesCS6D01G253900.2	Wheat	extracellular, mitochondrion	68.07	62.91
CDX95814	Canola	cytosol	7.14	61.82
VIT_19s0014g05380.t01	Wine grape	extracellular	11.55	57.29
TraesCS4D01G009200.1	Wheat	golgi	48.74	53.33
TraesCS7D01G277500.1	Wheat	peroxisome	47.48	51.95
TraesCS7D01G299500.1	Wheat	mitochondrion	38.87	36.71

Protein Annotations

MapMan:10.4.1.2	Gene3D:3.30.390.30	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152
GO:GO:0016491	GO:GO:0050660	GO:GO:0055114	InterPro:IPR016156	InterPro:IPR036188	PFAM:PF07992
PRINTS:PR00368	PRINTS:PR00411	PANTHER:PTHR43557	PANTHER:PTHR43557:SF1	SUPFAM:SSF51905	SUPFAM:SSF55424
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6D01G254000	EnsemblPlants:TraesCS6D01G254000.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6D:-:358225193..358229162

Molecular Weight (calculated)

52082.4 Da

IEP (calculated)

8.299

GRAVY (calculated)

-0.074

Length

476 amino acids

Sequence
(BLAST)

001: MGRAFVYVVL GGGVAAGYAA LEFARRGGYS RGELCIISEE AVAPYERPAL SKGYLLPEDP SRLPKFHTCV GANDELLTTK WYKEQGIELV LGTRVISADV
101: RRKTLLTATG ETISYKTLII ATGARALKLE EFGISGSDAA NICYLRNLED ADKLVNAMSS CSGGNAVVIG GGYIGMECAA ALVTNKIKVT MVFPEKHCMG
201: RLFTEKIAEY YESYYTSKGV TFTKGTVLTS FEKDSTGKVT SVVLRDGNHL PADMVVVGIG IRANTSLFEG QLLMEKGGIK VNGQMQTSDS SVYAVGDVAA
301: FPIKLFDGDI RRLEHVDSAR RTARHAVAAI LEPSKTRDVD YLPFFYSRVF TLSWQFYGDN VGEVIHYGDF TSNSPMFGAY WVSKGQITGA FLEGGNRDDY
401: EALSVVVRRK TKVSDMPELE RQGLAFAIQE SKKDVPDSGV TLGEKPTFVW YATAGVVAAV SISAFGYWYG RKRRRW

Best Arabidopsis Sequence Match ( AT3G27820.1 )
(BLAST)

001: MGRAFVYVIL GGGVAAGYAA LEFTRRGVSD GELCIISEEP VAPYERPALS KGFLLPEAPA RLPSFHTCVG ANDEKLTPKW YKDHGIELVL GTRVKSVDVR
101: RKTLLSSTGE TISYKFLIIA TGARALKLEE FGVEGSDAEN VCYLRDLADA NRLATVIQSS SNGNAVVIGG GYIGMECAAS LVINKINVTM VFPEAHCMAR
201: LFTPKIASLY EDYYRAKGVK FIKGTVLTSF EFDSNKKVTA VNLKDGSHLP ADLVVVGIGI RPNTSLFEGQ LTIEKGGIKV NSRMQSSDSS VYAIGDVATF
301: PVKLFGEMRR LEHVDSARKS ARHAVSAIMD PIKTGDFDYL PFFYSRVFAF SWQFYGDPTG DVVHFGEYED GKSFGAYWVK KGHLVGSFLE GGTKEEYETI
401: SKATQLKPAV TIDLEELERE GLGFAHTVVS QQKVPEVKDI PSAEMVKQSA SVVMIKKPLY VWHAATGVVV AASVAAFAFW YGRRRRRW

Arabidopsis Description

MDAR4MDAR4 [Source:UniProtKB/TrEMBL;Acc:A0A178VES2]
SUBAcon: [vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.