CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 6
mitochondrion 4

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH59968	Soybean	plastid	76.43	88.39
PGSC0003DMT400032099	Potato	plastid	77.05	77.05
VIT_02s0025g00340.t01	Wine grape	plastid	77.25	76.94
Solyc08g081530.2.1	Tomato	plastid	75.2	76.14
Bra027670.1-P	Field mustard	plastid	74.8	75.57
CDY34388	Canola	plastid	74.39	74.69
CDY25549	Canola	plastid	74.18	74.49
AT1G63940.2	Thale cress	mitochondrion, plastid	74.8	74.04
GSMUA_Achr5P17510_001	Banana	plastid	69.47	70.77
Os08t0151800-01	Rice	mitochondrion	69.67	69.25
Zm00001d024633_P001	Maize	mitochondrion	70.7	69.14
KXG24413	Sorghum	mitochondrion, plastid	70.29	68.06
TraesCS7A01G304000.1	Wheat	mitochondrion	68.44	67.34
TraesCS7B01G204400.1	Wheat	plastid	67.83	67.0
TraesCS7D01G299500.1	Wheat	mitochondrion	68.85	66.67
HORVU7Hr1G072240.4	Barley	mitochondrion, plastid	67.21	66.0
CDX93897	Canola	cytosol, peroxisome, plastid	30.12	61.51
KRH30834	Soybean	nucleus	38.93	43.88
KRH32676	Soybean	endoplasmic reticulum, extracellular, nucleus	38.73	43.65
KRG94085	Soybean	peroxisome	37.7	38.49
KRH07189	Soybean	plasma membrane	37.3	38.08

Protein Annotations

MapMan:10.4.1.2	EntrezGene:100819919	Gene3D:3.30.390.30	Gene3D:3.50.50.60	EMBL:ACUP02004755	ncoils:Coil
InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	EnsemblPlantsGene:GLYMA_08G017800	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0050660
GO:GO:0055114	UniProt:I1KPF0	InterPro:IPR016156	InterPro:IPR036188	EnsemblPlants:KRH41238	ProteinID:KRH41238
ProteinID:KRH41238.1	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00411	PANTHER:PTHR43557	PANTHER:PTHR43557:SF6
SUPFAM:SSF51905	UniParc:UPI00023C6247	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr8:+:1433690..1440617

Molecular Weight (calculated)

53290.9 Da

IEP (calculated)

8.780

GRAVY (calculated)

-0.173

Length

488 amino acids

Sequence
(BLAST)

001: MPSPSVRRLT MAAISNSLSL KHSFSLSRAP PSSSSIKFKF RRCYAAFANE NREYVIVGGG NAAGYAARTF VEHGMADGRL CIVTKEPYAP YERPALTKAY
101: LFPPDKKPAR LPGFHTCVGS GGERQTPGWY KENGIEMLYE DPVKDIDIEK HTLTTSSGKL LKYGSLVIAT GCTASRFPEK IGGNLPGVHY IRDVGDADAL
201: ILSLEKAKKV VVVGGGYIGM EVAAAAVGWK LDTTIIFPED HLLQRLFTPS LARRYEELYQ KNGVKILKGA SIKNLEAGSN GHVAAVKLGD GSLVEADTVI
301: IGIGAKPAVT PFERVGLNTE VGGIQVDGQF RTSTPGIFAV GDVAAFPLKI YNRISRVEHV DHARRSAQHC VKALLSAQTH TYDYLPYFYS RIFEYEGSPR
401: KVWWQFFGDN VGETVEIGNF DPKISTFWIE SGKLKGVLLE SGSPEEFQLL PKLARSQPLI DKAKLQNATS VEEALEIARE SLQGEAAV

Best Arabidopsis Sequence Match ( AT1G63940.2 )
(BLAST)

001: MSAVRRVMAL ASTTLPTKSG LSLWCPSSPS LARRFPARFS PIGSRIASRS LVTASFANEN REFVIVGGGN AAGYAARTFV ENGMADGRLC IVTKEAYAPY
101: ERPALTKAYL FPPEKKPARL PGFHTCVGGG GERQTPDWYK EKGIEVIYED PVAGADFEKQ TLTTDAGKQL KYGSLIIATG CTASRFPDKI GGHLPGVHYI
201: REVADADSLI ASLGKAKKIV IVGGGYIGME VAAAAVAWNL DTTIVFPEDQ LLQRLFTPSL AQKYEELYRQ NGVKFVKGAS INNLEAGSDG RVSAVKLADG
301: STIEADTVVI GIGAKPAIGP FETLAMNKSI GGIQVDGLFR TSTPGIFAIG DVAAFPLKIY DRMTRVEHVD HARRSAQHCV KSLLTAHTDT YDYLPYFYSR
401: VFEYEGSPRK VWWQFFGDNV GETVEVGNFD PKIATFWIES GRLKGVLVES GSPEEFQLLP KLARSQPLVD KAKLASASSV EEALEIAQAA LQS

Arabidopsis Description

MDAR5MDAR6 [Source:UniProtKB/TrEMBL;Acc:A0A178WFH3]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.