CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, plastid, cytosol

Predictor Summary:

cytosol 2
peroxisome 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, plastid
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027670.1-P	Field mustard	plastid	73.64	36.44
CDY34388	Canola	plastid	74.06	36.42
CDY25549	Canola	plastid	73.64	36.21
AT1G63940.2	Thale cress	mitochondrion, plastid	71.97	34.89
Solyc08g081530.2.1	Tomato	plastid	62.76	31.12
PGSC0003DMT400032099	Potato	plastid	62.76	30.74
VIT_02s0025g00340.t01	Wine grape	plastid	61.92	30.2
KRH41238	Soybean	nucleus	61.51	30.12
GSMUA_Achr5P17510_001	Banana	plastid	57.32	28.6
Os08t0151800-01	Rice	mitochondrion	58.16	28.31
KRH59968	Soybean	plastid	49.79	28.2
TraesCS7B01G204400.1	Wheat	plastid	57.74	27.94
TraesCS7A01G304000.1	Wheat	mitochondrion	57.74	27.82
TraesCS7D01G299500.1	Wheat	mitochondrion	58.16	27.58
HORVU7Hr1G072240.4	Barley	mitochondrion, plastid	56.9	27.36
Zm00001d024633_P001	Maize	mitochondrion	56.49	27.05
KXG24413	Sorghum	mitochondrion, plastid	55.65	26.39
CDY11263	Canola	peroxisome	34.73	19.08
CDX80881	Canola	peroxisome	34.31	18.85
CDY13340	Canola	peroxisome	30.54	16.82
CDX78130	Canola	peroxisome	30.54	16.82
CDX73597	Canola	peroxisome	30.54	16.82
CDX74001	Canola	cytosol	27.2	16.5
CDX86468	Canola	extracellular	30.13	15.52
CDY44437	Canola	vacuole	30.54	15.37
CDY07945	Canola	peroxisome	28.45	15.32
CDY49764	Canola	plasma membrane, vacuole	29.29	15.12
CDX95814	Canola	cytosol	2.09	9.09

Protein Annotations

MapMan:10.4.1.2	Gene3D:3.30.390.30	Gene3D:3.50.50.60	GO:A0A078DYB4	EnsemblPlants:CDX93897	ProteinID:CDX93897
ProteinID:CDX93897.1	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-linked_Rdtase_dimer_sf	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0008150	GO:GO:0008152	GO:GO:0016491	GO:GO:0050660	GO:GO:0055114
EnsemblPlantsGene:GSBRNA2T00156715001	InterPro:IPR016156	InterPro:IPR036188	PANTHER:PTHR43557	PANTHER:PTHR43557:SF6	SUPFAM:SSF51905
SUPFAM:SSF55424	UniParc:UPI0004EDB565	:	:	:	:

Description

BnaC04g20560D

Coordinates

chrLK031878:+:513427..515379

Molecular Weight (calculated)

26304.2 Da

IEP (calculated)

6.661

GRAVY (calculated)

-0.187

Length

239 amino acids

Sequence
(BLAST)

001: MQYKNVGGTK ACSIKEMNGA SINNLEAGSD GRVTAVKLVY GSTIEADTVV IGIGAKPAMG PFETLSMNNS IGGIQADKSS SSNHRLMACS RQVPLDFFCY
101: WRCCSLPVED QSVEHVDHAR RSAQHCVKSL LTASTYVYDY LPYFYSRVYE YEGSSRKVWW QFYGDNMGET VEVGNFNPKI ATFWIDFGRL KGVLVESGSP
201: EFQLLPKLAR SQPIVDKAKL ASASSVEEAL QIAEAALHS

Best Arabidopsis Sequence Match ( AT1G63940.1 )
(BLAST)

001: MALASTTLPT KSGLSLWCPS SPSLARRFPA RFSPIGSRIA SRSLVTASFA NENREFVIVG GGNAAGYAAR TFVENGMADG RLCIVTKEAY APYERPALTK
101: AYLFPPEKKP ARLPGFHTCV GGGGERQTPD WYKEKGIEVI YEDPVAGADF EKQTLTTDAG KQLKYGSLII ATGCTASRFP DKIGGHLPGV HYIREVADAD
201: SLIASLGKAK KIVIVGGGYI GMEVAAAAVA WNLDTTIVFP EDQLLQRLFT PSLAQKYEEL YRQNGVKFVK GASINNLEAG SDGRVSAVKL ADGSTIEADT
301: VVIGIGAKPA IGPFETLAMN KSIGGIQVDG LFRTSTPGIF AIGDVAAFPL KIYDRMTRVE HVDHARRSAQ HCVKSLLTAH TDTYDYLPYF YSRVFEYEGS
401: PRKVWWQFFG DNVGETVEVG NFDPKIATFW IESGRLKGVL VESGSPEEFQ LLPKLARSQP LVDKAKLASA SSVEEALEIA QAALQS

Arabidopsis Description

MDAR5MDAR6 [Source:UniProtKB/TrEMBL;Acc:A0A178WFH3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.