Factsheet for TraesCS7B01G204400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

plastid: 16595579
plastid: 18419817
mitochondrion: 21043471

msms PMID: 18419817 doi

FM Dupont

Western Regional Research Center, United States Department of Agriculture, Agricultural Research Service, 800 Buchanan Street, Albany, CA 94710K, USA.

msms PMID: 21043471 doi

RP Jacoby, AH Millar, NL Taylor

ARC Centre of Excellence in Plant Energy Biology & Centre for Comparative Analysis of Biomolecular Networks, M316, The University of Western Australia, 35 Stirling Highway, Crawley,WA 6009, Australia.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU7Hr1G072240.4	Barley	mitochondrion, plastid	91.5	90.95
TraesCS7A01G304000.1	Wheat	mitochondrion	90.89	90.52
TraesCS7D01G299500.1	Wheat	mitochondrion	91.09	89.29
Os08t0151800-01	Rice	mitochondrion	83.4	83.91
Zm00001d024633_P001	Maize	mitochondrion	84.21	83.37
KXG24413	Sorghum	mitochondrion, plastid	84.82	83.13
GSMUA_Achr5P17510_001	Banana	plastid	72.47	74.74
Bra027670.1-P	Field mustard	plastid	68.22	69.77
Solyc08g081530.2.1	Tomato	plastid	68.02	69.71
CDY34388	Canola	plastid	68.42	69.55
CDY25549	Canola	plastid	68.42	69.55
PGSC0003DMT400032099	Potato	plastid	68.62	69.47
AT1G63940.2	Thale cress	mitochondrion, plastid	68.62	68.76
KRH59968	Soybean	plastid	58.7	68.72
VIT_02s0025g00340.t01	Wine grape	plastid	67.61	68.16
KRH41238	Soybean	nucleus	67.0	67.83
CDX93897	Canola	cytosol, peroxisome, plastid	27.94	57.74
TraesCS4B01G010500.1	Wheat	golgi	38.26	43.45
TraesCS7B01G175300.1	Wheat	cytosol	39.47	43.14
TraesCS6B01G301200.1	Wheat	extracellular	37.45	37.22
TraesCS6B01G301300.1	Wheat	extracellular	37.65	35.03

Protein Annotations

MapMan:10.4.1.2	Gene3D:3.30.390.30	Gene3D:3.50.50.60	InterPro:FAD/NAD-bd_sf	InterPro:FAD/NAD-binding_dom	InterPro:FAD/NAD-linked_Rdtase_dimer_sf
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009409	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570	GO:GO:0009628
GO:GO:0010319	GO:GO:0016491	GO:GO:0046686	GO:GO:0050660	GO:GO:0055114	InterPro:IPR016156
InterPro:IPR036188	PFAM:PF07992	PRINTS:PR00368	PRINTS:PR00411	PFscan:PS51257	PANTHER:PTHR43557
PANTHER:PTHR43557:SF6	SUPFAM:SSF51905	EnsemblPlantsGene:TraesCS7B01G204400	EnsemblPlants:TraesCS7B01G204400.1	SEG:seg	:

Description

No Description!

Coordinates

chr7B:-:374713332..374722185

Molecular Weight (calculated)

53147.3 Da

IEP (calculated)

7.461

GRAVY (calculated)

-0.099

Length

494 amino acids

Sequence
(BLAST)

001: MTSALRRKAA QMASAAAAGT GCYSQTSWAL RRLGAGGGAL ASAATRRRNC SVSAAAVFDN QNREYVIVGG GNAAGYAART FVEHGMADGR LCIVSKEAVP
101: PYERPALTKG YLFPPEKKPA RLPGFHTCVG SGGQRQTAEW YKENGIEVLY EDPVEAFDGK TQTLKTSSGK ILKYGSLIIS TGCAAARLPE KIGGDLPGVH
201: YIRDVADADS LVSSLGKAKK IVVIGGGYIG MEVAAAACGW NLDTTIIFPE DHIMPRLFTP SLAKKYEELY EQNGVKFVKG ALIDKLDAGS DGRVSSAILK
301: DGSVVEADTV IVGIGAKPSV SPFEAVGVNI EVGGIEVDSM FRTSIPSIFA IGDVAAFPLK MYDRIARVEH VDHARKSAQH CIETLLTSQA KAYDYLPYFY
401: SRVFEYEGSS RKIWWQFYGD NVGETIEVGN FDPKIATFWI DSDSRLKGVF LESGTSEEFS LLPKLARSQP IVDKAKLKSA TSVEDALEIA RSSL

Best Arabidopsis Sequence Match ( AT1G63940.2 )
(BLAST)

001: MSAVRRVMAL ASTTLPTKSG LSLWCPSSPS LARRFPARFS PIGSRIASRS LVTASFANEN REFVIVGGGN AAGYAARTFV ENGMADGRLC IVTKEAYAPY
101: ERPALTKAYL FPPEKKPARL PGFHTCVGGG GERQTPDWYK EKGIEVIYED PVAGADFEKQ TLTTDAGKQL KYGSLIIATG CTASRFPDKI GGHLPGVHYI
201: REVADADSLI ASLGKAKKIV IVGGGYIGME VAAAAVAWNL DTTIVFPEDQ LLQRLFTPSL AQKYEELYRQ NGVKFVKGAS INNLEAGSDG RVSAVKLADG
301: STIEADTVVI GIGAKPAIGP FETLAMNKSI GGIQVDGLFR TSTPGIFAIG DVAAFPLKIY DRMTRVEHVD HARRSAQHCV KSLLTAHTDT YDYLPYFYSR
401: VFEYEGSPRK VWWQFFGDNV GETVEVGNFD PKIATFWIES GRLKGVLVES GSPEEFQLLP KLARSQPLVD KAKLASASSV EEALEIAQAA LQS

Arabidopsis Description

MDAR5MDAR6 [Source:UniProtKB/TrEMBL;Acc:A0A178WFH3]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.