Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane, peroxisome
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d045774_P001 | Maize | plasma membrane | 84.46 | 85.91 |
| TraesCS7D01G216100.1 | Wheat | cytosol, peroxisome, plasma membrane | 53.72 | 55.79 |
| TraesCS7A01G214000.1 | Wheat | cytosol, peroxisome, plasma membrane | 53.72 | 55.59 |
| EER89615 | Sorghum | cytosol, peroxisome, plasma membrane | 39.86 | 43.7 |
| EER89616 | Sorghum | plasma membrane | 36.82 | 38.79 |
| KXG19807 | Sorghum | plasma membrane | 25.68 | 35.85 |
| EES09243 | Sorghum | plasma membrane | 30.07 | 11.4 |
| OQU76269 | Sorghum | plasma membrane | 29.73 | 10.6 |
| OQU82858 | Sorghum | cytosol, peroxisome, plasma membrane | 31.08 | 10.45 |
| KXG35244 | Sorghum | plasma membrane | 26.01 | 10.43 |
| KXG19831 | Sorghum | plasma membrane | 30.41 | 9.83 |
| OQU92813 | Sorghum | endoplasmic reticulum, plasma membrane | 26.01 | 9.39 |
| KXG33698 | Sorghum | plasma membrane | 29.05 | 8.76 |
| OQU85243 | Sorghum | plasma membrane | 25.0 | 8.72 |
| OQU83898 | Sorghum | plasma membrane | 26.69 | 8.29 |
| KXG27752 | Sorghum | plasma membrane | 26.69 | 8.21 |
| EES07991 | Sorghum | plasma membrane | 26.35 | 8.19 |
| OQU84100 | Sorghum | plasma membrane | 25.34 | 8.13 |
| EER89631 | Sorghum | plasma membrane | 28.38 | 6.8 |
| OQU76264 | Sorghum | plasma membrane | 26.35 | 6.44 |
| OQU76268 | Sorghum | plasma membrane | 6.08 | 6.16 |
Protein Annotations
| EnsemblPlants:KXG19808 | EnsemblPlantsGene:SORBI_3010G119600 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:PGG_dom |
| PANTHER:PTHR24177 | PANTHER:PTHR24177:SF84 | PFAM:PF13962 | ProteinID:KXG19808 | ProteinID:KXG19808.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0007F1E9F8 | UniProt:A0A194YIN1 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr10:-:13576871..13578244
Molecular Weight (calculated)
32775.8 Da
IEP (calculated)
7.337
GRAVY (calculated)
0.058
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCPINVEEA QGSRAISVAD SAPGDTTLEI SATGKRGIPV LVAPAPLHSQ RDCDGRARRG GATAEEMMGS MGFQGFLLLE ARDDDDPVAQ RKKWFREMRG
101: WLMVLATVAA SVTYQAGLNP PGGFWQDDNE HHHAGNPVLR DKHWSRYMIF YYLNATAFVT SLVIMVLLMS ERFYHTEAKV VALMLTTCID LISLIGAYIA
201: GTTRFFSSCI YIIVIACVAF AGVIYIGEVM AEICKFFMRN MPCMLQLVQS RWFPVPAEVV RSLQQQPEER ISQTRTTARN NQRGGCCACC APRAEG
101: WLMVLATVAA SVTYQAGLNP PGGFWQDDNE HHHAGNPVLR DKHWSRYMIF YYLNATAFVT SLVIMVLLMS ERFYHTEAKV VALMLTTCID LISLIGAYIA
201: GTTRFFSSCI YIIVIACVAF AGVIYIGEVM AEICKFFMRN MPCMLQLVQS RWFPVPAEVV RSLQQQPEER ISQTRTTARN NQRGGCCACC APRAEG
001: MEINGQEGHR YEESSSEWFV KYLKRQGDWL EKTRGNLMVT ATVIAGMSFQ VMVNPPGGVW QSDNCSFGNQ TGTAPFCKGR AGTAVLEYES SKRIAYIGMI
101: ISSTVSFSTS MSLILLVISG IRLRNRMIMA ILGTFMVVAV LCISAAFFFA IVLVQSDDQI IRYILLIYVG FWVVFPVLIL LIQLVRFIGW LICFMCCCCC
201: PRRRRFH
101: ISSTVSFSTS MSLILLVISG IRLRNRMIMA ILGTFMVVAV LCISAAFFFA IVLVQSDDQI IRYILLIYVG FWVVFPVLIL LIQLVRFIGW LICFMCCCCC
201: PRRRRFH
Arabidopsis Description
AT3G13950 protein [Source:UniProtKB/TrEMBL;Acc:B9DG91]
SUBAcon: [cytosol,plasma membrane,peroxisome]
SUBAcon: [cytosol,plasma membrane,peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.