CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 4
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0666000-01	Rice	plasma membrane	63.8	83.05
Zm00001d043947_P001	Maize	plasma membrane	51.04	81.67
TraesCS5B01G546500.1	Wheat	plasma membrane	61.46	75.16
TraesCS3B01G270800.1	Wheat	plasma membrane	61.2	74.37
TraesCS3D01G242700.1	Wheat	plasma membrane	62.5	73.39
HORVU3Hr1G060600.6	Barley	plasma membrane	61.98	68.59
EES19904	Sorghum	plasma membrane	56.25	66.26
TraesCS3A01G242700.1	Wheat	plasma membrane	61.2	65.64
OQU89253	Sorghum	plasma membrane	49.74	61.81
EER90037	Sorghum	plasma membrane	51.82	61.61
KXG24994	Sorghum	cytosol, endoplasmic reticulum, plasma membrane	48.7	60.32
EER90050	Sorghum	plastid	49.22	58.88
KXG33171	Sorghum	plasma membrane	54.69	58.01
OQU86360	Sorghum	plasma membrane	42.19	52.77

Protein Annotations

EnsemblPlants:KXG33063	EnsemblPlantsGene:SORBI_3003G249000	Gene3D:1.20.144.10	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:P_Acid_Pase_2/haloperoxi_sf	InterPro:P_Acid_Pase_2/haloperoxidase	PANTHER:PTHR10165	PANTHER:PTHR10165:SF91	PFAM:PF01569	ProteinID:KXG33063
ProteinID:KXG33063.1	SEG:seg	SMART:SM00014	SUPFAM:SSF48317	TMHMM:TMhelix	UniParc:UPI00081AE793
UniProt:A0A1B6Q570	MapMan:5.2.2.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:58765783..58769849

Molecular Weight (calculated)

42130.9 Da

IEP (calculated)

8.982

GRAVY (calculated)

0.061

Length

384 amino acids

Sequence
(BLAST)

001: MMMIRSPTKG SRSSKVKKSK PTTTTTPAPP PALLDLASFT GSRSSSAHYS YREVPREDHH HRPAPAPAAA AAPLEMQASH DDGATAAAGP ASCSSLPTMP
101: KVARSHAWDW VALLLLVAVD VLLNVIEPFH RFVGAGMMTD LRYPMKSNTV PVWAVPIVAV IGPMIIFVIV YIRRRNVYDL HHAILGILFA VLITGVLTDA
201: IKDAVGRPRP NFFWRCFPDG IAVYDNITTG VICHGDPSVI KEGHKSFPSG HTSWSFAGLG FLSWYLAGKI TVFDRRGHVA KLCVVLLPLL VAALIAISRV
301: DDYWHHWQDV CTGGFLGLVV ASVCYLQFFP APSDEKGFWP HAHLRFVRER EAEESRATQR STETAGARTS HELDALEAGR RDQL

Best Arabidopsis Sequence Match ( AT3G02600.10 )
(BLAST)

001: MREAQLGGHT LRSHGMTVAR THMHDWIILV LLVILECVLL IIHPFYRFVG KDMMTDLSYP LKSNTVPIWS VPVYAMLLPL VIFIFIYFRR RDVYDLHHAV
101: LGLLYSVLVT AVLTDAIKNA VGRPRPDFFW RCFPDGKALY DSLGDVICHG DKSVIREGHK SFPSGHTSWS FSGLGFLSLY LSGKIQAFDG KGHVAKLCIV
201: ILPLLFAALV GISRVDDYWH HWQDVFAGGL LGLAISTICY LQFFPPPYHT EGWGPYAYFQ VLEAARVQGA ANGAVQQPPP QVNNGEEEDG GFMGLHLVDN
301: PTMRREEDVE TGRG

Arabidopsis Description

LPP3Putative lipid phosphate phosphatase 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LFD1]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.