CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, extracellular, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU76087	Sorghum	nucleus, plasma membrane	60.59	35.52
EES01531	Sorghum	nucleus	54.12	32.39
TraesCS2D01G083700.1	Wheat	nucleus	50.59	26.14
TraesCS2B01G100600.1	Wheat	nucleus	50.59	24.78
KXG27891	Sorghum	cytosol	22.94	16.74
OQU89927	Sorghum	nucleus	28.24	14.68
Os07t0272700-00	Rice	nucleus	51.76	14.55
OQU82996	Sorghum	cytosol	20.59	14.52
OQU86599	Sorghum	nucleus	28.24	13.52
Os07t0456900-01	Rice	nucleus	50.0	10.95

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	UniProt:A0A1W0VS29	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	EnsemblPlants:OQU76088	ProteinID:OQU76088
ProteinID:OQU76088.1	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR45605	EnsemblPlantsGene:SORBI_3010G090850	SUPFAM:SSF101941
UniParc:UPI0009DC833C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:7917988..7918497

Molecular Weight (calculated)

18377.8 Da

IEP (calculated)

8.217

GRAVY (calculated)

-0.460

Length

170 amino acids

Sequence
(BLAST)

001: MAAAACAPGL PPGILFSPED EVAVGHYLLP RLQGWPLPID GLILDDDPLS APPWELLERN GRKEQAFFFA EGQARCGKGT RQRRTCAGGG WWEGQKTCAE
101: GDKLRVPGCG GGGIEAAWRK KAFNFHSGSG GGDGKRSTGW VMHEYAVTGP EDLARSPLRL YHIRLSSYGR

Best Arabidopsis Sequence Match ( AT2G18060.1 )
(BLAST)

001: MEPMESCSVP PGFRFHPTDE ELVGYYLRKK IASQKIDLDV IRDIDLYRIE PWDLQEQCRI GYEEQNEWYF FSHKDKKYPT GTRTNRATMA GFWKATGRDK
101: AVYDKTKLIG MRKTLVFYKG RAPNGKKSDW IMHEYRLESD ENAPPQEEGW VVCRAFKKRA TGQAKNTETW SSSYFYDEVA PNGVNSVMDP IDYISKQQHN
201: IFGKGLMCKQ ELEGMVDGIN YIQSNQFIQL PQLQSPSLPL MKRPSSSMSI TSMDNNYNYK LPLADEESFE SFIRGEDRRK KKKQVMMTGN WRELDKFVAS
301: QLMSQEDNGT SSFAGHHIVN EDKNNNDVEM DSSMFLSERE EENRFVSEFL STNSDYDIGI CVFDN

Arabidopsis Description

NAC037VND1 [Source:UniProtKB/TrEMBL;Acc:A0A178VM15]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.