CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG27891	Sorghum	cytosol	37.34	38.63
TraesCS5D01G111300.1	Wheat	nucleus	31.95	29.06
HORVU6Hr1G073200.1	Barley	cytosol	31.95	24.29
TraesCS6B01G323600.1	Wheat	extracellular, mitochondrion, nucleus	34.02	21.58
TraesCS6B01G323700.1	Wheat	mitochondrion, nucleus, vacuole	34.02	21.58
TraesCS3A01G113300.1	Wheat	nucleus	36.1	20.67
OQU76088	Sorghum	cytosol, extracellular, nucleus	14.52	20.59
OQU89927	Sorghum	nucleus	20.33	14.98
OQU86599	Sorghum	nucleus	21.16	14.37
OQU76087	Sorghum	nucleus, plasma membrane	17.01	14.14
EES01531	Sorghum	nucleus	15.35	13.03

Protein Annotations

MapMan:15.5.17	Gene3D:3.30.310.150	UniProt:A0A1Z5RI13	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:IPR003441	InterPro:IPR036093	InterPro:NAC-dom	InterPro:NAC_dom_sf	EnsemblPlants:OQU82996	ProteinID:OQU82996
ProteinID:OQU82996.1	PFAM:PF02365	PFscan:PS51005	PANTHER:PTHR45605	EnsemblPlantsGene:SORBI_3005G059900	SUPFAM:SSF101941
UniParc:UPI000B8B9701	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:+:6172987..6173772

Molecular Weight (calculated)

26353.9 Da

IEP (calculated)

6.312

GRAVY (calculated)

-0.534

Length

241 amino acids

Sequence
(BLAST)

001: MEARRFGFGA SMSPANKFDP TDEDIVAQYL LPRAVGLPNP YEHAVIDADP CSCPPWELLR RHGHAGSDQA FFFVPPRVMS RNAGRKAEDK ALVIVRGDGD
101: GDARGAPELT VMFRRYNLSY HRKGDRRSSG WVMHEYHVVH PELRPGAVVA RIKITEKAKK MGKRPREQQL QEEDAVIARA GTAAALVPGL DQPGPSNYFG
201: SESDYGHAAG NAVVASVVGE GVGDNFLQLD GNDDNFLQDE G

Best Arabidopsis Sequence Match ( AT1G02230.1 )
(BLAST)

001: MMNPVGFRFR PNDEEIVDHY LRPKNLDSDT SHVDEVISTV DICSFEPWDL PSKSMIKSRD GVWYFFSVKE MKYNRGDQQR RRTNSGFWKK TGKTMTVMRK
101: RGNREKIGEK RVLVFKNRDG SKTDWVMHEY HATSLFPNQM MTYTVCKVEF KGEETEISSS STGSEIEQIH SLIPLVNSSG GSEGSSFHSQ ELQNSSQSGV
201: FANVQGESQI DDATTPIEEE WKTWLNNDGD EQRNIMFMQD HRSDYTPLKS LTGVFSDDSS DDNDSDLISP KTNSIGTSST CASFASSNHQ IDQTQHSPDS
301: TVQLVSLTQE VSQGPGQVTV IREHKLGEES VKKKRASFVY RMIHRLVKKI HQCYSISRT

Arabidopsis Description

NAC004NAC domain-containing protein 4 [Source:UniProtKB/Swiss-Prot;Acc:O81913]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.