Factsheet for PGSC0003DMT400018938

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
peroxisome 1
cytosol 1
endoplasmic reticulum 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g065770.1.1	Tomato	endoplasmic reticulum, golgi	93.94	88.74
PGSC0003DMT400080690	Potato	endoplasmic reticulum, golgi	62.22	61.48
PGSC0003DMT400048249	Potato	endoplasmic reticulum, golgi	62.22	61.11
PGSC0003DMT400039271	Potato	cytosol, endoplasmic reticulum, mitochondrion	42.42	45.36
PGSC0003DMT400039412	Potato	endoplasmic reticulum	43.64	44.17
PGSC0003DMT400039272	Potato	endoplasmic reticulum	42.83	42.83
PGSC0003DMT400018545	Potato	endoplasmic reticulum	42.63	42.45
PGSC0003DMT400039270	Potato	cytosol, endoplasmic reticulum, plastid	24.65	41.78
PGSC0003DMT400022922	Potato	cytosol	30.1	40.49
PGSC0003DMT400018331	Potato	endoplasmic reticulum	38.99	39.47
PGSC0003DMT400050139	Potato	endoplasmic reticulum, plasma membrane	38.59	37.52
PGSC0003DMT400052065	Potato	endoplasmic reticulum	39.39	37.5
PGSC0003DMT400097242	Potato	cytosol	36.57	37.17
PGSC0003DMT400027430	Potato	endoplasmic reticulum, golgi	37.98	36.86
PGSC0003DMT400023141	Potato	endoplasmic reticulum, plasma membrane	36.57	36.49
PGSC0003DMT400031804	Potato	endoplasmic reticulum, extracellular	39.19	35.02
PGSC0003DMT400078030	Potato	endoplasmic reticulum	36.36	34.55
PGSC0003DMT400072790	Potato	cytosol	30.3	31.65

Protein Annotations

Gene3D:1.10.630.10	MapMan:50.1.13	ncoils:Coil	InterPro:Cyt_P450	InterPro:Cyt_P450_E_grp-I	InterPro:Cyt_P450_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005506	GO:GO:0008150	GO:GO:0008152
GO:GO:0016705	GO:GO:0020037	GO:GO:0055114	InterPro:IPR036396	UniProt:M1ABE3	PFAM:PF00067
EnsemblPlantsGene:PGSC0003DMG400007343	PGSC:PGSC0003DMG400007343	EnsemblPlants:PGSC0003DMT400018938	PRINTS:PR00385	PRINTS:PR00463	PANTHER:PTHR24296
PANTHER:PTHR24296:SF11	SUPFAM:SSF48264	UniParc:UPI000295D8C7	:	:	:

Description

Cytochrome P450-dependent fatty acid hydroxylase [Source:PGSC_GENE;Acc:PGSC0003DMG400007343]

Coordinates

chr11:+:38083370..38084857

Molecular Weight (calculated)

57089.2 Da

IEP (calculated)

9.502

GRAVY (calculated)

-0.246

Length

495 amino acids

Sequence
(BLAST)

001: MNISKTILTN VFIYPKSIKI PRSYPIIGSY FSIKSNINRR IQWTSEIVLS TLPSLTFTLY RPLGHRHIFT ANPSNVEHIL KTCFHNYQKG YLGKETLKDL
101: LGNGIFNADG EIWKYQRKLA SHEFNSKSLR KFIENIVDVE LSDRLIPILT MSASQKSVVD FQDLLQRFTF DNICMVAYGY DPAYLLPSFP EAKFANAFEE
201: VVRISSDRFN SLAPFIWKLK RILNVGSEKK LRVCATQIRN MAKEMIKQKK ERSNYNKRSS DDLLSRFLIS SSDEEQNMHD EEFIIDIVIS FILAGRDTAS
301: AALTWFIWLI SKNPEVEKAI LEEIAKTTMS SSLTYDEVKD MPYTHASLCE SMRLYPPVPV DTKEAMQDDI LPDGTFAKKG TRISYHPYAM GRVEDIWGKD
401: WQAFRPERWL KRDVKTGNWK FVPKDPFVYP VFQAGPRVCL GKDMAFLQMK KVVAGVLPRF RFVPVVDEGE EPVLIAYLTI KVKGGLMVRI EERTN

Best Arabidopsis Sequence Match ( AT1G34540.1 )
(BLAST)

001: MALLIFIFLL CFPISIFFIF FTKKSSSEFG FKSYPIVGSF PGLVNNRHRF LDWTVETLSR CPTQTAIFRR PGKQQLIMTA NPSNVEYMLK TKFESFPKGQ
101: QFTSVLEDFL GHGIFNSDGD MWWKQRKTAS YEFSTKSLRD FVMSNVTVEI NTRLVPVLVE AATTGKLIDL QDILERFAFD NICKLAFNVD CACLGHDGAV
201: GVNFMRAFET AATIISQRFR SVASCAWRIK KKLNIGSERV LRESIATVHK FADEIVRNRI DQGRSSDHKE DLLSRFISKE EMNSPEILRD IVISFILAGR
301: DTTSSALSWF FWLLSMHPEV EDKILQELNS IRARTGKRIG EVYGFEHLKM MNYLHAAITE SLRLYPPVPV DIKSCAEDNV LPDGTFVGKG WAITYNIFAM
401: GRMESIWGKD CDRFDPERWI DETNGCFRGE DPSKFPAFHA GPRMCVGKDM AYIQMKSIVA AVLERFVVEV PGKERPEILL SMTLRIKGGL FARVQERS

Arabidopsis Description

CYP94D1CYP94D1 [Source:UniProtKB/TrEMBL;Acc:A0A178WEM5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.