Factsheet for PGSC0003DMT400034269

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
extracellular 1
cytosol 2
plasma membrane 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034271	Potato	endoplasmic reticulum, extracellular, vacuole	90.83	41.25
GSMUA_Achr4P23960_001	Banana	mitochondrion	57.8	32.98
VIT_12s0059g02590.t01	Wine grape	extracellular	69.72	31.41
KRH26839	Soybean	cytosol	56.88	30.69
VIT_12s0059g02620.t01	Wine grape	extracellular, plasma membrane	67.89	29.37
VIT_12s0059g02580.t01	Wine grape	extracellular	61.47	27.8
CDY52060	Canola	endoplasmic reticulum, extracellular, vacuole	64.22	27.45
CDY68211	Canola	endoplasmic reticulum, extracellular, vacuole	64.22	27.45
Bra031321.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	62.39	26.67
AT3G22060.1	Thale cress	extracellular	61.47	26.59
CDY57408	Canola	endoplasmic reticulum, plasma membrane, vacuole	61.47	26.27
KRH22513	Soybean	cytosol	33.03	21.82
VIT_12s0059g02600.t01	Wine grape	extracellular	67.89	19.07
TraesCS4B01G355900.1	Wheat	endoplasmic reticulum	33.03	15.19
TraesCS4D01G349300.1	Wheat	endoplasmic reticulum	33.03	15.19
TraesCS5A01G525100.1	Wheat	endoplasmic reticulum, extracellular	33.03	15.13
PGSC0003DMT400091649	Potato	extracellular	36.7	15.09
Os03t0564600-01	Rice	extracellular	33.03	14.63
EER91340	Sorghum	extracellular, golgi	35.78	14.08
Zm00001d032401_P001	Maize	extracellular	33.03	14.06
HORVU4Hr1G085990.1	Barley	extracellular, mitochondrion, plasma membrane	33.95	12.33
HORVU5Hr1G018110.1	Barley	cytosol	19.27	11.86
HORVU3Hr1G052170.1	Barley	cytosol	15.6	10.97
HORVU2Hr1G108130.1	Barley	cytosol	15.6	10.76

Protein Annotations

EnsemblPlants:PGSC0003DMT400034269	EnsemblPlantsGene:PGSC0003DMG400013175	Gene3D:3.30.430.20	InterPro:GNK2	InterPro:GNK2_sf	InterPro:IPR002902
InterPro:IPR038408	PANTHER:PTHR32411	PANTHER:PTHR32411:SF42	PFAM:PF01657	PFscan:PS51473	PGSC:PGSC0003DMG400013175
UniParc:UPI00029530FE	UniProt:M1B0E4	MapMan:35.1	:	:	:

Description

DUF26 domain-containing protein 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400013175]

Coordinates

chr12:+:6782329..6782658

Molecular Weight (calculated)

12363.9 Da

IEP (calculated)

8.089

GRAVY (calculated)

-0.435

Length

109 amino acids

Sequence
(BLAST)

001: MNKFYMWNVR VVKNPKYFNA KTKELLGNLA ANAYKTSNLY ATGEMEIEEN KKLYGLVQCT RDLSNDDCKK CLDGIITEIP SCCDGKEGGR VVGGSCNFRY
101: EIYPFVNIP

Best Arabidopsis Sequence Match ( AT3G22060.1 )
(BLAST)

001: MSSLKRIVWF PILAIAIQIL SIHTVLSQSQ NNAFLFHKCS DIEGSFTSKS LYESNLNNLF SQLSYKVPST GFAASSTGNT PNNVNGLALC RGDASSSDCR
101: SCLETAIPEL RQRCPNNKAG IVWYDNCLVK YSSTNFFGKI DFENRFYLYN VKNVSDPSTF NSQTKALLTE LTKKATTRDN QKLFATGEKN IGKNKLYGLV
201: QCTRDLKSIT CKACLNGIIG ELPNCCDGKE GGRVVGGSCN FRYEIYPFVK TA

Arabidopsis Description

CRRSP38Cysteine-rich repeat secretory protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRJ9]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.