Factsheet for PGSC0003DMT400039856

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g088820.1.1	Tomato	cytosol	96.8	97.19
PGSC0003DMT400020578	Potato	cytosol	86.6	82.16
Bra040471.1-P	Field mustard	cytosol	63.2	77.45
VIT_18s0001g10470.t01	Wine grape	cytosol	81.2	77.33
KRH15363	Soybean	cytosol	80.6	77.06
KRH05680	Soybean	cytosol	80.6	76.76
AT5G09890.2	Thale cress	cytosol	78.8	76.36
CDY03775	Canola	cytosol	78.8	75.62
CDY46196	Canola	cytosol	78.8	75.62
Bra031468.1-P	Field mustard	cytosol	78.8	75.33
CDY56408	Canola	cytosol	79.6	75.24
PGSC0003DMT400065573	Potato	cytosol	58.8	57.31
PGSC0003DMT400000873	Potato	cytosol	56.6	55.71
PGSC0003DMT400059233	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	19.4	30.7
PGSC0003DMT400083117	Potato	cytosol, plastid	27.6	29.61
PGSC0003DMT400059084	Potato	cytosol	26.6	28.6
PGSC0003DMT400043552	Potato	cytosol	26.4	27.56
PGSC0003DMT400080233	Potato	cytosol, plastid	26.0	27.37
PGSC0003DMT400070360	Potato	cytosol	25.8	26.65
PGSC0003DMT400013171	Potato	cytosol	26.6	14.06
PGSC0003DMT400074066	Potato	nucleus, plastid	3.6	2.32
PGSC0003DMT400074067	Potato	cytosol	0.2	1.72

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.6.4	Gene3D:3.30.200.20	InterPro:AGC-kinase_C	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0004672	GO:GO:0004674	GO:GO:0005488	GO:GO:0005524	GO:GO:0006464
GO:GO:0006468	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0019538	InterPro:IPR000719	InterPro:IPR000961	InterPro:Kinase-like_dom_sf	UniProt:M1B8W2
PFAM:PF00069	PFAM:PF00433	EnsemblPlantsGene:PGSC0003DMG400015413	PGSC:PGSC0003DMG400015413	EnsemblPlants:PGSC0003DMT400039856	ScanProsite:PS00107
ScanProsite:PS00108	PFscan:PS50011	PFscan:PS51285	PANTHER:PTHR24356	PANTHER:PTHR24356:SF195	InterPro:Pkinase_C
InterPro:Prot_kinase_dom	InterPro:Protein_kinase_ATP_BS	SMART:SM00133	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS
UniParc:UPI00029591AC	:	:	:	:	:

Description

Ndr kinase [Source:PGSC_GENE;Acc:PGSC0003DMG400015413]

Coordinates

chr12:+:56626986..56631332

Molecular Weight (calculated)

57335.7 Da

IEP (calculated)

6.311

GRAVY (calculated)

-0.499

Length

500 amino acids

Sequence
(BLAST)

001: MEGADQVFNS MEPEFSVSSP VTRQKAAAAK KIIENHYKNH LQGLQDRKER RRTLQRKAQE AQIPDDEQEK MLRNLEKRET EFMRLQRHKV GIDDFELLTV
101: IGKGAFGEVR LCRFKSTGDV FAMKKLKKSE MLSRGQVEHV RSERNLLVEV DSRCIVKLFY SFQDSDFLYL IMEYLPGGDI MTLLMREDIL SEDVAQFYMA
201: ESILAIHSIH QHNYVHRDIK PDNLILDKNG HLKLSDFGLC KPLESKYSSL LEAEDLTSQE SLSETADSDR APWLMPKEQL QQWKRNRRAL AYSTVGTLDY
301: MAPEVLLKKG YGMECDWWSL GAILYEMLVG YPPFCSEDPR LTCRKIINWR ACLKFPEEPK VSDEAKDLIC RLLCDVESRL GTRGVEEIKA HPWFEGTKWD
401: ALYEMEASYK PIVTGELDTQ NFEKFPEVEG TQSTTPRVGP WRKMLTSKDA NFIGYTYKKS DILKSAGTSG IDASSNGSKP PPSLVSLFGM ITLHDLTCTS

Best Arabidopsis Sequence Match ( AT5G09890.1 )
(BLAST)

001: MDGADGTVRV KPGRGFETET DVAVSSPVTR QKAAAAKQFI ENHYKNYLQG LHERMERRRE FQRKVQEAQL PVEEQDEMMR NLARRETEYM RLQRRKIGID
101: DFELLTVIGK GAFGEVRLCR LRSTSEVYAM KKLKKTEMLS RGQVEHVRSE RNLLAEVDSR YIVKLFYSFQ DSECLYLIME YLPGGDIMTL LMREDILSED
201: VARFYIAESI LAIHSIHQHN YVHRDIKPDN LILDKSGHLK LSDFGLCKPL DDKYSSLLLE DDEMLSQDSE NQSGKSDADK APWQMPKEQL LQWKRNRRAL
301: AYSTVGTLDY MAPEVLLKKG YGMECDWWSL GAILYEMLVG YPPFCSDDPR ITCRKIINWR VCLKFPEEPK ISDEARDLIC RLLCDVDSRL GTRGVEEIKS
401: HPWFKGTPWD KLYDMEAAYR PIVDGELDTQ NFEKFPEVEG SPSEAPQVGP WRKMLTSKDT NFIGFTFKKS DITRSMESSG ADMKSNGSGE APSLISLLGR
501: INMEEGEGGE LNHKT

Arabidopsis Description

Protein kinase family protein [Source:UniProtKB/TrEMBL;Acc:F4KFD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.