Factsheet for PGSC0003DMT400040385

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g032740.2.1	Tomato	plastid, unclear	85.47	97.2
VIT_11s0016g03720.t01	Wine grape	cytosol	86.7	85.64
TraesCS3A01G305400.1	Wheat	cytosol, peroxisome	81.53	85.53
GSMUA_Achr4P08110_001	Banana	cytosol	88.42	85.27
GSMUA_Achr7P25170_001	Banana	cytosol, peroxisome, plastid	86.95	83.25
PGSC0003DMT400028106	Potato	plastid	86.45	77.48
TraesCS3B01G331100.1	Wheat	golgi	84.98	75.99
Os01t0760600-01	Rice	plastid	85.47	75.43
KXG33419	Sorghum	plastid	84.98	75.16
Zm00001d043382_P001	Maize	plasma membrane	83.74	74.07
HORVU3Hr1G073220.8	Barley	mitochondrion, plastid	84.73	70.49
PGSC0003DMT400052597	Potato	mitochondrion	49.26	47.06
PGSC0003DMT400076866	Potato	cytosol, plastid	53.2	46.75
PGSC0003DMT400017112	Potato	cytosol	44.09	43.13

Protein Annotations

KEGG:00220+2.6.1.1	KEGG:00250+2.6.1.1	KEGG:00270+2.6.1.1	KEGG:00330+2.6.1.1	KEGG:00350+2.6.1.1	KEGG:00360+2.6.1.1
KEGG:00400+2.6.1.1	KEGG:00401+2.6.1.1	KEGG:00710+2.6.1.1	KEGG:00950+2.6.1.1	KEGG:00960+2.6.1.1	EntrezGene:102579446
MapMan:25.1.7	Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:Aminotransferase_I/II	InterPro:Asp_trans	GO:GO:0003674
GO:GO:0003824	GO:GO:0004069	GO:GO:0005488	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152
GO:GO:0008483	GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0030170	GO:GO:0080130
InterPro:IPR015421	InterPro:IPR015422	UniProt:M1B9T8	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	EnsemblPlantsGene:PGSC0003DMG400015637
PGSC:PGSC0003DMG400015637	EnsemblPlants:PGSC0003DMT400040385	PRINTS:PR00799	ScanProsite:PS00105	PANTHER:PTHR11879	PANTHER:PTHR11879:SF33
InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383	UniParc:UPI0002952B73	RefSeq:XP_006352160.1

Description

Aspartate aminotransferase [Source:PGSC_GENE;Acc:PGSC0003DMG400015637]

Coordinates

chr7:-:16783015..16788092

Molecular Weight (calculated)

44705.8 Da

IEP (calculated)

8.295

GRAVY (calculated)

-0.117

Length

406 amino acids

Sequence
(BLAST)

001: MADSVFAHVV RAPEDPILGV TVAYNKDSSP VKVNLGVGAY RTEEGKPLVL NVVRRAEQML VNDTSRVKEY LSITGLADFN KLSAKLIFGA DSPAIKENRV
101: TTVQCLSGTG SLRVGAEFLA RHYHEHTIYI PQPTWGNHPK IFTLAGLSVK YYRYYDPATR GLDFQGLLDD LTAAPSGAIV LLHACAHNPT GVDPTIDQWE
201: KIRKLMRSKG LLPFFDSAYQ GFASGNLDAD AQSVRMFVAD GGECLAAQSY AKNMGLYGER VGALSIVCKD SNVASKVESQ LKMVIRPMYS NPPIHGASIV
301: ATILKDRQMY DEWTVELKAM ADRIISMRQQ LYDAMQARGT PGDWSHIIKQ IGMFTFTGLN VEQVSFMTRE YHIYMTSDGR ISMAGLSSRT VPHLADAMHA
401: AVTRTA

Best Arabidopsis Sequence Match ( AT5G19550.1 )
(BLAST)

001: MDSVFSNVAR APEDPILGVT VAYNNDPSPV KINLGVGAYR TEEGKPLVLD VVRKAEQQLV NDPSRVKEYI PIVGISDFNK LSAKLILGAD SPAITESRVT
101: TVQCLSGTGS LRVGAEFLKT HYHQSVIYIP KPTWGNHPKV FNLAGLSVEY FRYYDPATRG LDFKGLLEDL GAAPSGAIVL LHACAHNPTG VDPTSEQWEQ
201: IRQLMRSKSL LPFFDSAYQG FASGSLDTDA QSVRTFVADG GECLIAQSYA KNMGLYGERV GALSIVCKSA DVASKVESQV KLVVRPMYSS PPIHGASIVA
301: TILKSSDMYN NWTIELKEMA DRIKSMRQQL FEAIQARGTP GDWSHIIKQI GMFTFTGLNK EQVEFMTKEF HIYMTSDGRI SMAGLSSKTV PHLADAMHAA
401: VTRLG

Arabidopsis Description

ASP2Aspartate aminotransferase [Source:UniProtKB/TrEMBL;Acc:Q1EBW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.