Factsheet for Solyc07g032740.2.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear, plastid

Predictor Summary:

cytosol 3
plastid 2
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040385	Potato	cytosol	97.2	85.47
VIT_11s0016g03720.t01	Wine grape	cytosol	85.71	74.45
TraesCS3A01G305400.1	Wheat	cytosol, peroxisome	80.67	74.42
GSMUA_Achr4P08110_001	Banana	cytosol	87.11	73.87
GSMUA_Achr7P25170_001	Banana	cytosol, peroxisome, plastid	85.99	72.41
Solyc08g068330.2.1	Tomato	plastid	84.87	67.04
TraesCS3B01G331100.1	Wheat	golgi	84.03	66.08
Os01t0760600-01	Rice	plastid	84.31	65.43
KXG33419	Sorghum	plastid	84.03	65.36
Zm00001d043382_P001	Maize	plasma membrane	82.91	64.49
HORVU3Hr1G073220.8	Barley	mitochondrion, plastid	84.03	61.48
Solyc07g055210.2.1	Tomato	extracellular, mitochondrion, plastid	49.02	41.18
Solyc08g041870.2.1	Tomato	plastid	51.82	40.04
Solyc10g075170.1.1	Tomato	mitochondrion	36.69	35.6

Protein Annotations

KEGG:00220+2.6.1.1	KEGG:00250+2.6.1.1	KEGG:00270+2.6.1.1	KEGG:00330+2.6.1.1	KEGG:00350+2.6.1.1	KEGG:00360+2.6.1.1
KEGG:00400+2.6.1.1	KEGG:00401+2.6.1.1	KEGG:00710+2.6.1.1	KEGG:00950+2.6.1.1	KEGG:00960+2.6.1.1	MapMan:25.1.7
Gene3D:3.40.640.10	Gene3D:3.90.1150.10	InterPro:Aminotransferase_I/II	InterPro:Asp_trans	GO:GO:0003674	GO:GO:0003824
GO:GO:0004069	GO:GO:0005488	GO:GO:0006520	GO:GO:0008150	GO:GO:0008152	GO:GO:0008483
GO:GO:0009058	GO:GO:0009987	GO:GO:0016740	GO:GO:0030170	GO:GO:0080130	InterPro:IPR015421
InterPro:IPR015422	UniProt:K4CDL3	InterPro:NHTrfase_class1_PyrdxlP-BS	PFAM:PF00155	PRINTS:PR00799	ScanProsite:PS00105
PANTHER:PTHR11879	PANTHER:PTHR11879:SF33	InterPro:PyrdxlP-dep_Trfase	InterPro:PyrdxlP-dep_Trfase_dom1	InterPro:PyrdxlP-dep_Trfase_major	SUPFAM:SSF53383
EnsemblPlantsGene:Solyc07g032740.2	EnsemblPlants:Solyc07g032740.2.1	UniParc:UPI000276B22C	:	:	:

Description

Aspartate aminotransferase [Source:UniProtKB/TrEMBL;Acc:K4CDL3]

Coordinates

chr7:-:40981937..40987085

Molecular Weight (calculated)

39223.2 Da

IEP (calculated)

8.298

GRAVY (calculated)

-0.076

Length

357 amino acids

Sequence
(BLAST)

001: MADSVFAHVV RAPEDPILGV TVAYNNDSSP VKVNLGVGAY RTEEGKPLVP NVVRRAEQML VNDTSRVKEY LSITGIADFN KLSAKLIFGA DSPAIKENRV
101: TTVQCLSGTG SLRVGAEFLA RHYHEHTIYI PQPTWGNHPK IFTLAGLSVK YYRYYDPATR GLDFQVLLHA CGFASGKLDA DAQSVRMFVA DGGECLAAQS
201: YAKNMGLYGE RVGALSIVCK DSDVASKVES QLKMVIRPMY SNPPIHGASI VATILKDRQM YDEWTVELKA MADRIISMRQ QLYAAMQARG TPGDWSHIIK
301: QIGMFTFTGL NAEQVSFMTS EYHIYMTSDG RISMAGLSSR TVPHLADAMH AAITRVA

Best Arabidopsis Sequence Match ( AT5G19550.1 )
(BLAST)

001: MDSVFSNVAR APEDPILGVT VAYNNDPSPV KINLGVGAYR TEEGKPLVLD VVRKAEQQLV NDPSRVKEYI PIVGISDFNK LSAKLILGAD SPAITESRVT
101: TVQCLSGTGS LRVGAEFLKT HYHQSVIYIP KPTWGNHPKV FNLAGLSVEY FRYYDPATRG LDFKGLLEDL GAAPSGAIVL LHACAHNPTG VDPTSEQWEQ
201: IRQLMRSKSL LPFFDSAYQG FASGSLDTDA QSVRTFVADG GECLIAQSYA KNMGLYGERV GALSIVCKSA DVASKVESQV KLVVRPMYSS PPIHGASIVA
301: TILKSSDMYN NWTIELKEMA DRIKSMRQQL FEAIQARGTP GDWSHIIKQI GMFTFTGLNK EQVEFMTKEF HIYMTSDGRI SMAGLSSKTV PHLADAMHAA
401: VTRLG

Arabidopsis Description

ASP2Aspartate aminotransferase [Source:UniProtKB/TrEMBL;Acc:Q1EBW2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.