Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 11
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
20363867
extracellular: 22364583 plastid: 22908117 plastid: 26371478 unclear: 26455813 plastid: 28183294 nucleus: 28394025 endoplasmic reticulum: 29145071 extracellular: 29876421 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID:
22908117
doi
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID:
20363867
doi
Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.
msms PMID:
29876421
doi
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID:
26371478
doi
Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.
msms PMID:
29145071
doi
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
msms PMID:
26455813
doi
Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.
msms PMID:
22364583
doi
Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.
msms PMID:
28183294
doi
Center of Genetics Engineering (CEINGE) Biotecnologie Avanzate S.c. a R.l, via Pansini, 80100, Napoli, Italy., Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, via Pansini, 80100, Napoli, Italy., Institute for the Animal Production System in the Mediterranean Environment, National Research Council of Italy (CNR-ISPAAM), via Argine 1085, 80147, Napoli, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy., Institute of Biosciences and BioResources, National Research Council of Italy (CNR-IBBR), via Università 133, 80055, Portici, NA, Italy. nscotti@unina.it.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400076866 | Potato | cytosol, plastid | 97.84 | 97.84 |
CDY13467 | Canola | plastid | 79.44 | 80.84 |
Bra023969.1-P | Field mustard | plastid | 79.22 | 80.79 |
AT4G31990.3 | Thale cress | plastid | 80.3 | 80.3 |
CDX72339 | Canola | plastid | 79.44 | 79.61 |
GSMUA_Achr6P30270_001 | Banana | plastid | 77.27 | 77.78 |
KXG31276 | Sorghum | plastid | 76.41 | 76.91 |
KRH05255 | Soybean | plastid | 76.62 | 76.46 |
KRH15792 | Soybean | plastid | 76.62 | 76.46 |
Os02t0797500-01 | Rice | plastid | 75.54 | 76.2 |
TraesCS6B01G393600.1 | Wheat | golgi | 74.03 | 75.16 |
TraesCS6D01G344200.1 | Wheat | plastid | 74.03 | 75.0 |
Zm00001d018386_P005 | Maize | plastid | 75.32 | 74.04 |
GSMUA_Achr5P16540_001 | Banana | cytosol, peroxisome, plastid | 42.86 | 73.61 |
TraesCS6A01G360700.2 | Wheat | golgi, plastid, unclear | 73.59 | 72.65 |
VIT_04s0008g06040.t01 | Wine grape | cytosol, peroxisome, plastid | 81.17 | 72.12 |
CDX68807 | Canola | plastid | 79.65 | 71.73 |
HORVU0Hr1G017370.1 | Barley | plastid | 73.38 | 65.19 |
CDX72238 | Canola | mitochondrion | 28.79 | 63.33 |
Solyc07g032740.2.1 | Tomato | plastid, unclear | 40.04 | 51.82 |
Solyc08g068330.2.1 | Tomato | plastid | 47.84 | 48.89 |
Solyc07g055210.2.1 | Tomato | extracellular, mitochondrion, plastid | 40.48 | 44.0 |
Solyc10g075170.1.1 | Tomato | mitochondrion | 28.79 | 36.14 |
Protein Annotations
Description
Aspartate aminotransferase, chloroplastic [Source:Projected from Arabidopsis thaliana (AT4G31990) UniProtKB/Swiss-Prot;Acc:P46248]
Coordinates
chr8:+:25450517..25456311
Molecular Weight (calculated)
50848.1 Da
IEP (calculated)
9.431
GRAVY (calculated)
-0.207
Length
462 amino acids
Sequence
(BLAST)
(BLAST)
001: MASTMFSLAS VTPSASISLQ DNLKPKLKIG TSSQRAFPGK DFMKAKSNGR TTMAVAVNVS RFEGITMAPA DPILGVSEAF KADTNELKLN LGVGAYRTED
101: LQPYVLNVVK KAENLILERG ENKEYLPIEG LAAFNKVTAE LLFGKDNPVL QQQRVATIQG LSGTGSLRIA AALIERYFPY SKILISSPTW GNHKNIFNDA
201: RVPWSEYRYY DPKTVGLDFA GMIEDIKAAP EGSFILLHGC AHNPTGIDPT PEQWKKIADV IQKKNHIPFF DVAYQGFASG SLDEDASSVR MFAARGMELL
301: VAQSYSKNLG LYGERIGAIN VLCSSADAAT RVKSQLKRLA RPMYSNPPIH GAKIVANVVG TPELFSEWKE EMEMMAGRIK SVRQKLYDSL SAKDKSGKNW
401: SFILKQIGMF SFTGLDRAQS ENMANKWHVY MTKDGRISLA GLSAAKCEYL ADAIIDSYYN VS
101: LQPYVLNVVK KAENLILERG ENKEYLPIEG LAAFNKVTAE LLFGKDNPVL QQQRVATIQG LSGTGSLRIA AALIERYFPY SKILISSPTW GNHKNIFNDA
201: RVPWSEYRYY DPKTVGLDFA GMIEDIKAAP EGSFILLHGC AHNPTGIDPT PEQWKKIADV IQKKNHIPFF DVAYQGFASG SLDEDASSVR MFAARGMELL
301: VAQSYSKNLG LYGERIGAIN VLCSSADAAT RVKSQLKRLA RPMYSNPPIH GAKIVANVVG TPELFSEWKE EMEMMAGRIK SVRQKLYDSL SAKDKSGKNW
401: SFILKQIGMF SFTGLDRAQS ENMANKWHVY MTKDGRISLA GLSAAKCEYL ADAIIDSYYN VS
001: MASLMLSLGS TSLLPREINK DKLKLGTSAS NPFLKAKSFS RVTMTVAVKP SRFEGITMAP PDPILGVSEA FKADTNGMKL NLGVGAYRTE ELQPYVLNVV
101: KKAENLMLER GDNKEYLPIE GLAAFNKATA ELLFGAGHPV IKEQRVATIQ GLSGTGSLRL AAALIERYFP GAKVVISSPT WGNHKNIFND AKVPWSEYRY
201: YDPKTIGLDF EGMIADIKEA PEGSFILLHG CAHNPTGIDP TPEQWVKIAD VIQEKNHIPF FDVAYQGFAS GSLDEDAASV RLFAERGMEF FVAQSYSKNL
301: GLYAERIGAI NVVCSSADAA TRVKSQLKRI ARPMYSNPPV HGARIVANVV GDVTMFSEWK AEMEMMAGRI KTVRQELYDS LVSKDKSGKD WSFILKQIGM
401: FSFTGLNKAQ SDNMTDKWHV YMTKDGRISL AGLSLAKCEY LADAIIDSYH NVS
101: KKAENLMLER GDNKEYLPIE GLAAFNKATA ELLFGAGHPV IKEQRVATIQ GLSGTGSLRL AAALIERYFP GAKVVISSPT WGNHKNIFND AKVPWSEYRY
201: YDPKTIGLDF EGMIADIKEA PEGSFILLHG CAHNPTGIDP TPEQWVKIAD VIQEKNHIPF FDVAYQGFAS GSLDEDAASV RLFAERGMEF FVAQSYSKNL
301: GLYAERIGAI NVVCSSADAA TRVKSQLKRI ARPMYSNPPV HGARIVANVV GDVTMFSEWK AEMEMMAGRI KTVRQELYDS LVSKDKSGKD WSFILKQIGM
401: FSFTGLNKAQ SDNMTDKWHV YMTKDGRISL AGLSLAKCEY LADAIIDSYH NVS
Arabidopsis Description
ASP5Aspartate aminotransferase [Source:UniProtKB/TrEMBL;Acc:B9DG21]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.