Factsheet for PGSC0003DMT400055044

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 4
extracellular 1
plastid 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g007060.2.1	Tomato	cytosol	86.46	94.32
VIT_08s0105g00220.t01	Wine grape	cytosol	60.21	65.68
KRH68010	Soybean	cytosol	57.29	62.5
KRG96258	Soybean	mitochondrion	56.25	58.57
AT3G05675.1	Thale cress	cytosol	50.83	55.33
CDY14655	Canola	cytosol	49.58	54.09
Os07t0668800-01	Rice	cytosol	47.92	52.39
GSMUA_Achr1P23410_001	Banana	cytosol	38.12	51.69
Zm00001d021387_P001	Maize	cytosol	46.04	50.69
TraesCS5D01G369700.1	Wheat	cytosol, mitochondrion, nucleus	43.75	46.15
TraesCS5B01G362800.1	Wheat	cytosol, mitochondrion, nucleus	44.58	46.12
TraesCS5A01G360300.1	Wheat	cytosol	44.38	45.91
EER99337	Sorghum	cytosol	47.5	45.33
HORVU5Hr1G088840.1	Barley	cytosol	37.92	39.57
PGSC0003DMT400081827	Potato	cytosol	22.29	36.64
CDY14657	Canola	plastid	6.67	25.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400055044	EnsemblPlantsGene:PGSC0003DMG400021355	EntrezGene:102604620	Gene3D:3.30.710.10	InterPro:BTB/POZ_dom_prot	InterPro:SKP1/BTB/POZ_sf
PANTHER:PTHR31060	PANTHER:PTHR31060:SF7	PGSC:PGSC0003DMG400021355	RefSeq:XP_015164719.1	SEG:seg	SUPFAM:SSF54695
UniParc:UPI000296E544	UniProt:M1BX94	MapMan:35.1	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400021355]

Coordinates

chr1:+:2947180..2952400

Molecular Weight (calculated)

54318.1 Da

IEP (calculated)

4.632

GRAVY (calculated)

0.029

Length

480 amino acids

Sequence
(BLAST)

001: MLEGIRLRGV WPPPPGCLRA VRLTLALRAM YMDLILASTY LTALPNELKT SSKIGDRPTS DVVVRLRTQD GRDDWLYCHS HILVEESKYF ADRLSDSWPT
101: CQILDSRNCV EVYCEEPDLD SHVNVLRLFY VIADGLMMEI CHGVKNALGI LRVAVKLGCP RIIAVCVDYL EAVPWEEAEE EEILNTIPSM GSKVEPVLAR
201: LQPVNPTAVM KIFLAALQFA TSSPPSPLND LKNTAQEQLE YMLTEDDDAP LLSADEEIKL EVMRCVKKLL DRFNSIVESL LCDLQESISD SGKMQSLHSC
301: LTDLLWACQI LGKLEIIRDF VCSWTELSMK LVTIVQQKDG ENQILKTKLK VLEVTAKVLE AIGYGIVVLP TVKRLHMVKL WLPFVRTMKP LVDSVSEETE
401: EDLTLKFDSE IWQSLESAFV AIILTLSSVD QTDILTEWLE NQQIRYPDLT EAFEVWCYRS KVAKRRLATL GEEHNTAKAV

Best Arabidopsis Sequence Match ( AT3G05675.2 )
(BLAST)

001: MEPRDNQAEA SYTFGDRSSS DIVVRLRNEE GRDDWIYCHS KILSEKSQYF ADRLSDKWPT CKILDSRYCV EVICQESDYD HHINLLRLLY VVSDDVHEDN
101: LCHNVKSALG ILSVAKELSC PQIVTACVNY LEAVPWEEGE EEEILRIVPR IGSEAEPILA RLQPVDQSAV LEIFVSAFRF ATSSPPLLLG DIKSSAQEQI
201: EYMITEDDDA PLLIADEEVK LEVKQCVKSL FVRFFQCLEE ITLKPVESEV INKKGSFRMV LSDMCWVFQI LTKMEVVRDF VITWADISEK LVKVVEQLET
301: TVVEAVEIRV KVIEVTAKVI EAIGYGTVIL PTAKRLQMVK LWLPFVRNTK PLVDSPVRED EENDTVRYKI DGEIWQALES SFVSIILALP SADQAEILTE
401: WLSKNGLYPD LTEAFEVWCY RSKVAKRRLG LVGGEEENGM S

Arabidopsis Description

BTB/POZ domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A178VMR2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.