Factsheet for PGSC0003DMT400078690

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g091780.1.1	Tomato	cytosol, mitochondrion	86.75	55.53
VIT_07s0205g00140.t01	Wine grape	cytosol	52.41	33.81
GSMUA_Achr4P32130_001	Banana	mitochondrion	44.78	29.73
TraesCS5D01G417300.1	Wheat	cytosol, mitochondrion	41.97	29.35
TraesCS5B01G412300.1	Wheat	cytosol, mitochondrion	41.97	29.35
TraesCS5A01G407400.1	Wheat	cytosol, mitochondrion	41.77	29.21
KXG37461	Sorghum	cytosol	41.97	28.83
HORVU5Hr1G098780.4	Barley	mitochondrion	41.77	28.65
Zm00001d034239_P001	Maize	cytosol	40.56	28.37
CDX86959	Canola	cytosol	45.58	28.13
Os03t0773600-01	Rice	cytosol	41.37	28.03
Bra019606.1-P	Field mustard	cytosol, mitochondrion	45.38	27.97
CDY00219	Canola	cytosol, mitochondrion	45.38	27.97
AT3G49650.1	Thale cress	cytosol	44.98	27.55
GSMUA_Achr5P02020_001	Banana	mitochondrion	48.19	20.6
PGSC0003DMT400062969	Potato	cytosol	10.64	6.62
PGSC0003DMT400021738	Potato	cytosol	8.03	6.07
PGSC0003DMT400011996	Potato	cytosol	7.63	4.74
PGSC0003DMT400006508	Potato	cytosol	6.43	4.53
PGSC0003DMT400040835	Potato	plastid	3.82	3.1
PGSC0003DMT400022781	Potato	cytosol	2.41	2.75
CDX86958	Canola	cytosol	0.2	0.62

Protein Annotations

Gene3D:1.20.58.1980	MapMan:20.1.3.7	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0003774
GO:GO:0003777	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0007018
GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	InterPro:IPR001752	InterPro:Kinesin-like_fam
InterPro:Kinesin_motor_dom	UniProt:M1D0J8	InterPro:P-loop_NTPase	EnsemblPlantsGene:PGSC0003DMG400030620	PGSC:PGSC0003DMG400030620	EnsemblPlants:PGSC0003DMT400078690
PFscan:PS50067	PANTHER:PTHR24115	PANTHER:PTHR24115:SF372	SUPFAM:SSF52540	UniParc:UPI000295B4B6	SEG:seg

Description

Chromosome-associated kinesin KIF4A [Source:PGSC_GENE;Acc:PGSC0003DMG400030620]

Coordinates

chr2:+:42114421..42121320

Molecular Weight (calculated)

56746.6 Da

IEP (calculated)

6.592

GRAVY (calculated)

-0.691

Length

498 amino acids

Sequence
(BLAST)

001: MIATISPAVS QYHHTVNTLK YADRAKEIKT HIQKNIGTIN THVSDYQRMI DSLQIEVSQL RKELADKETQ LIAKPTEKAS DDELSWLDTL SHETSENVQE
101: RINLQKALFE IEEMNISNHN ELQNLDDAIA KQQAVEKGGA VVRALRARRQ VILDNIRDND ELSNNYLKEI EANEKRRCEL QAMIDEAISN NGNKTYLRVL
201: SQYRLLGIAN TELQLEIAMR DQIIHNQRET QKNLWSLLLS LGLDEKQITD LALKQGITIE DWTMTAQIQL SDRRQSPNTG SGTYTTLSSS PPTFQLGANV
301: PLEQYFCSTP ISLRNRRPPL IHCRDEDHSS YYLHDYSPSE NMTLNEGESC FKDGTSLHEV PNRHPLEFCS SYAPTRNQFS SCSESGMSVT PSHVDFRQQQ
401: MDVQSSSIRQ QIRPSCHADI SNTDYFHHGI TMVHRVSRHG RFHSSPLTQN FASLNSNHVR PKLGQFNLQD MQVLPSCDTT KKVSLSSNSR EAQPPRFA

Best Arabidopsis Sequence Match ( AT3G49650.1 )
(BLAST)

001: MPSIRAPAAK KTTTLTVAVK CRPLMEKERG RDIVRVNNSK EVVVLDPDLS KDYLDRIQNR TKEKKYCFDH AFGPESTNKN VYRSMSSVIS SVVHGLNATV
101: FAYGSTGSGK TYTMVGTRSD PGLMVLSLNT IFDMIKSDKS SDEFEVTCSY LEVYNEVIYD LLEKSSGHLE LREDPEQGIV VAGLRSIKVH SADRILELLN
201: LGNSRRKTES TEMNGTSSRS HAVLEIAVKR RQKNQNQVMR GKLALVDLAG SERAAETNNG GQKLRDGANI NRSLLALANC INALGKQHKK GLAYVPYRNS
301: KLTRILKDGL SGNSQTVMVA TISPADSQYH HTVNTLKYAD RAKEIKTHIQ KNIGTIDTHM SDYQRMIDNL QSEVSQLKTQ LAEKESQLSI KPFERGVERE
401: LSWLDGLSHQ ISENVQDRIN LQKALFELEE TNLRNRTELQ HLDDAIAKQA TEKDVVEALS SRRQVILDNI RDNDEAGVNY QRDIEENEKH RCELQDMLNE
501: AINNNGNKTY LHILNQYKLL GMGNTELQFE MAMRDQIIYN QREAQRNLWN LLMGLGVEEK QVFDLAAKQG ITIEDWSSIA LFPGLPYRKQ TPSFIPANIP
601: FVGHSYSKSS CTFQSYQDPS SKGQQWAPTP TLCREEHHSS YYFMRQEPPA FVNLRKSHDG WVGGSRPASR IDTGGNHRRV SYPQTVNNSS PRMASGPTFY
701: QTPQREMLLN TTSPYSSPRV GLINGATTPS VQPFYGSPRA VTVRNGSYNT PLAPAAVSTK GARNQQRVFG TSPLSGTKGV KNSSYGQNSH TKLYRGGGTK
801: GHSKGNNTQR QHQ

Arabidopsis Description

KIN8BKinesin-like protein KIN-8B [Source:UniProtKB/Swiss-Prot;Acc:Q9SCJ4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.