Factsheet for PGSC0003DMT400062969

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400037344
PGSC0003DMT400057390

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G18550.1	PGSC0003DMT400037344	AT4G26630.1	25387881
AT1G18550.1	PGSC0003DMT400057390	AT4G26630.1	25387881

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g114380.2.1	Tomato	cytosol	95.26	97.95
VIT_17s0000g04330.t01	Wine grape	cytosol	72.91	76.74
KRH62967	Soybean	nucleus	58.3	75.32
KRH56713	Soybean	cytosol, plastid	65.29	71.45
KRH03839	Soybean	nucleus	65.04	70.41
GSMUA_Achr6P13660_001	Banana	cytosol	58.3	68.48
Zm00001d042644_P001	Maize	cytosol	26.47	67.09
AT1G18550.1	Thale cress	nucleus	60.05	66.34
CDY19223	Canola	nucleus	59.18	65.83
CDY26149	Canola	nucleus	58.68	65.37
Bra025894.1-P	Field mustard	nucleus	56.43	64.48
Zm00001d048931_P001	Maize	nucleus	26.84	61.43
Os01t0605500-00	Rice	plastid	58.18	60.05
HORVU3Hr1G052930.1	Barley	plastid	57.43	59.82
TraesCS3D01G218300.1	Wheat	plastid	57.43	59.2
TraesCS3B01G246600.1	Wheat	plastid	57.18	58.72
TraesCS3A01G214700.1	Wheat	plastid	57.18	58.57
Zm00001d044420_P001	Maize	mitochondrion	55.93	57.29
EES03243	Sorghum	mitochondrion	55.31	56.87
PGSC0003DMT400022781	Potato	cytosol	14.61	26.83
PGSC0003DMT400021738	Potato	cytosol	19.85	24.13
PGSC0003DMT400006508	Potato	cytosol	20.6	23.37
PGSC0003DMT400011996	Potato	cytosol	21.97	21.95
PGSC0003DMT400040835	Potato	plastid	11.36	14.85
PGSC0003DMT400078690	Potato	cytosol	6.62	10.64

Protein Annotations

EntrezGene:102598036	MapMan:20.1.3.7	Gene3D:3.40.850.10	ncoils:Coil	GO:GO:0000166	GO:GO:0003674
GO:GO:0003774	GO:GO:0003777	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005856	GO:GO:0005874	GO:GO:0007018
GO:GO:0008017	GO:GO:0008150	GO:GO:0009987	GO:GO:0016787	InterPro:IPR001752	InterPro:IPR036961
InterPro:Kinesin-like_fam	InterPro:Kinesin_motor_CS	InterPro:Kinesin_motor_dom	InterPro:Kinesin_motor_dom_sf	UniProt:M1C9W2	InterPro:P-loop_NTPase
PFAM:PF00225	EnsemblPlantsGene:PGSC0003DMG400024505	PGSC:PGSC0003DMG400024505	EnsemblPlants:PGSC0003DMT400062969	PRINTS:PR00380	ScanProsite:PS00411
PFscan:PS50067	PANTHER:PTHR24115	PANTHER:PTHR24115:SF557	SMART:SM00129	SUPFAM:SSF52540	UniParc:UPI00029576C6
RefSeq:XP_015163170.1	SEG:seg	:	:	:	:

Description

Chromosome-associated kinesin KIF4A [Source:PGSC_GENE;Acc:PGSC0003DMG400024505]

Coordinates

chr3:+:54372475..54377190

Molecular Weight (calculated)

88999.1 Da

IEP (calculated)

10.281

GRAVY (calculated)

-0.594

Length

801 amino acids

Sequence
(BLAST)

001: MPVFTRSQIT DSQPQNDQRI RPRTDQEDTQ MARNLRNPHH GLKEKMKALT LLYEQQKQGS AAIKNQSVKP EDSRLSSHPS VDLVSSGRRA EKEQKQSKPI
101: SHVMRENTMH SSTVTRTYVA PPPPSGLDDG KENVAVVAGG DRIVGFSYPK RVNASSTVAR KLSLGSSTMP HTEPRATRRI VKENVQELDT ISEKAASKGG
201: GSDDGGSRIL VFVRLRPISR KEREAGARCC VKIVDGRDVY LTEFATENDY LRLKRLRGRH FTFDASFPDT ATQHDVYSTT TAELVEAVLQ GRNGSVFCYG
301: ATGAGKTYTM LGTIENPGVM VLAIKDLFSK IRQRSYDGNH VVHLSYLEVY NETVRDLLSP GRPLVLREDK QGIVAAGLTQ YRAYSTDEVM ALLQQGNLNR
401: TTEPTRCNET SSRSHAILQV VIEYHVKDSS NNIVNRVGKL SLIDLAGSER ALATDQRTLR SLEGANINKS LLALSSCINA LVEGKKHIPY RNSKLTQLLK
501: DSLGGACNTV MIANISPSNL SFGETQNTLH WADRAKEIRT KAYDAHEEMQ MPDSETDQAK LLLELQKENR ELRMRLAHQQ QKLITIQKEN LAANSSPAPS
601: IVSSILSPAP SSAQPNEKRK ARPSFLAGNC FTPESKRKGA DDPVRDLKKV VKGLEAEIER LKKDHVLQIK QKDDTIRELS RKSAKPAGGT QVGGVKRIVT
701: RASLRPREPH DVHLKSPSHR FHSPAPTAKK RSFWDITTAN SPSVVTLNGR KTRSHVNTET VAAPSMLLQL AYPCFWFVFM FGPHVFNCTT QPGFARQNVK
801: H

Best Arabidopsis Sequence Match ( AT1G18550.1 )
(BLAST)

001: MPVSTRSKVM KQERNEQENT NLNLPLRNPH QGLKEKMRAL TLLYEQQKRA SFSLRNPNHN QSPKPEDQRF KTQLLDSSKK GDRFHRLDGK DSTFVEEDTK
101: ENNVFEADRI FGVSSVPVKP SGVIRKLSMG NGARNVSEAE KLESLNASVS RILVFVRLRP MGKKERENGS RCCVKVLNKR DVYLTEFTNE NDYLRLKRLR
201: VRHFTFDSSF PETTTQQEVY STTTGDLVEA VLEGRNGSVF CYGATGAGKT YTMLGTMENP GVMVLAIKDL FAKVRQRSLD GNHVVHLSYL EVYNETVRDL
301: LSPGRPLILR EDKQGIVAAG LTQYRAYSTD EVMALLQRGN QNRTTEPTRC NETSSRSHAI LQVIVEYKTR DASMNIISRV GKLSLIDLAG SERALATDQR
401: TLRSLEGANI NRSLLALSSC INALVEGKKH IPYRNSKLTQ LLKDSLGGSC NTVMIANISP SSQSFGETQN TLHWADRAKE IRVKECEVNE EVVQVGEEEG
501: ADQAKLLLEL QKENSELRVQ LAKQQQKLLT LQAENIAAAN NNNNISLTPP SISSLMTPPS ALTAQQKKKP RHSLLSGTCF TPESLKRTKA EEAVKELQLT
601: VKALKMEMER MKREHGLQMK KQKDELMKDL CSRKSEKTPE RCKETRRIVT RGSLRPKEKE KELKSPSHRF ASPVAAAKKR SFWDITVANT SPALDRRKTR
701: SHGLVHQEAP SKLLQPGFAR PHMKH

Arabidopsis Description

KIN8AKinesin-like protein KIN-8A [Source:UniProtKB/Swiss-Prot;Acc:F4ICA0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.